View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_high_31 (Length: 219)
Name: NF1249_high_31
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_high_31 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 87761 - 87592
Alignment:
| Q |
1 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87761 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
87662 |
T |
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| Q |
101 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
170 |
Q |
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| T |
87661 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
87592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 95777 - 95608
Alignment:
| Q |
1 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95777 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
95678 |
T |
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| Q |
101 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
170 |
Q |
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| T |
95677 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
95608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 40870505 - 40870674
Alignment:
| Q |
1 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870505 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
40870604 |
T |
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| Q |
101 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
170 |
Q |
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| T |
40870605 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
40870674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 40878522 - 40878691
Alignment:
| Q |
1 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878522 |
ccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatcattat |
40878621 |
T |
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| Q |
101 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
170 |
Q |
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| T |
40878622 |
caaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgatt |
40878691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 21715686 - 21715642
Alignment:
| Q |
4 |
ccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
48 |
Q |
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| T |
21715686 |
ccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 40352733 - 40352777
Alignment:
| Q |
4 |
ccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
48 |
Q |
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| T |
40352733 |
ccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
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