View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_high_5 (Length: 435)

Name: NF1249_high_5
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_high_5
NF1249_high_5
[»] scaffold0004 (1 HSPs)
scaffold0004 (265-424)||(346982-347141)
[»] chr7 (11 HSPs)
chr7 (265-424)||(16647114-16647273)
chr7 (265-424)||(571995-572154)
chr7 (265-424)||(32147169-32147328)
chr7 (265-424)||(42207608-42207767)
chr7 (265-424)||(17621475-17621634)
chr7 (265-424)||(44659420-44659581)
chr7 (265-424)||(25497742-25497903)
chr7 (265-424)||(42163564-42163725)
chr7 (313-421)||(26457974-26458085)
chr7 (313-424)||(23897384-23897498)
chr7 (294-418)||(34324985-34325108)
[»] chr4 (7 HSPs)
chr4 (265-424)||(20193902-20194061)
chr4 (265-424)||(53980782-53980943)
chr4 (277-421)||(12750208-12750353)
chr4 (277-407)||(2925522-2925653)
chr4 (318-406)||(22747655-22747745)
chr4 (317-424)||(53528319-53528428)
chr4 (279-421)||(19569153-19569296)
[»] chr3 (9 HSPs)
chr3 (265-424)||(13989523-13989682)
chr3 (265-424)||(23343067-23343226)
chr3 (265-424)||(2169960-2170119)
chr3 (265-424)||(9725993-9726152)
chr3 (265-397)||(13981932-13982066)
chr3 (294-424)||(17031765-17031896)
chr3 (318-377)||(13925174-13925233)
chr3 (332-421)||(10935792-10935883)
chr3 (332-424)||(7870505-7870597)
[»] chr2 (15 HSPs)
chr2 (265-424)||(634973-635132)
chr2 (265-424)||(7911272-7911431)
chr2 (265-424)||(14897474-14897633)
chr2 (265-424)||(22429037-22429196)
chr2 (265-424)||(22434631-22434790)
chr2 (265-424)||(43775681-43775840)
chr2 (265-424)||(1524421-1524582)
chr2 (348-424)||(14889408-14889484)
chr2 (265-329)||(14889480-14889544)
chr2 (311-424)||(19088122-19088237)
chr2 (311-407)||(16444724-16444822)
chr2 (316-424)||(25229489-25229599)
chr2 (318-383)||(7386179-7386244)
chr2 (271-406)||(11310713-11310850)
chr2 (356-407)||(21290995-21291048)
[»] chr1 (7 HSPs)
chr1 (265-424)||(15715313-15715472)
chr1 (265-421)||(33494234-33494390)
chr1 (302-424)||(3618099-3618223)
chr1 (265-424)||(22577485-22577645)
chr1 (311-409)||(40275583-40275683)
chr1 (311-421)||(26027383-26027495)
chr1 (313-370)||(49626392-49626449)
[»] chr5 (7 HSPs)
chr5 (267-424)||(28368293-28368450)
chr5 (265-424)||(30958833-30958992)
chr5 (265-424)||(1532975-1533136)
chr5 (311-424)||(25105782-25105897)
chr5 (311-424)||(25164875-25164990)
chr5 (346-421)||(18084624-18084701)
chr5 (388-421)||(26460681-26460714)
[»] chr6 (5 HSPs)
chr6 (267-424)||(14851333-14851490)
chr6 (318-424)||(19442492-19442600)
chr6 (316-397)||(14462086-14462168)
chr6 (265-383)||(6931792-6931909)
chr6 (278-424)||(17271452-17271598)
[»] scaffold0062 (2 HSPs)
scaffold0062 (277-421)||(18583-18728)
scaffold0062 (277-421)||(28751-28896)
[»] scaffold0102 (1 HSPs)
scaffold0102 (316-406)||(10665-10757)
[»] chr8 (3 HSPs)
chr8 (278-424)||(17906318-17906464)
chr8 (294-378)||(11685526-11685609)
chr8 (277-421)||(29541989-29542134)
[»] scaffold0066 (1 HSPs)
scaffold0066 (272-424)||(10575-10727)


Alignment Details
Target: scaffold0004 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 346982 - 347141
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  346982 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 347081  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  347082 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 347141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 16647273 - 16647114
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16647273 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 16647174  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  16647173 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 16647114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 571995 - 572154
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| |||| || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  571995 tgcttcatgaaacgagtttgatttaagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 572094  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  572095 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 572154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 32147328 - 32147169
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  32147328 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttatttatctataatctttagtcgactttaacacatgatcct 32147229  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  32147228 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 32147169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 42207767 - 42207608
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||| ||||||| ||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42207767 tgcttcatgaagcgagtttgatttcagtagaattgtctcattccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 42207668  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  42207667 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 42207608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 17621634 - 17621475
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17621634 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattttgtagatattttctttatctataatctttagtcgactttaacacatgatcct 17621535  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||    
T  17621534 cattattacttatcacatagcgctatattatatgcaaaaacacatcgacgttaacttcat 17621475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 44659581 - 44659420
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||  |||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  44659581 tgcttcatgaaacgagtttgatttcagtagaatcgtctctttccattctgtagatattttatttatctataatctttagtcgactttaacacatgatcct 44659482  T
Q  365 cattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| ||||||||||||||||    
T  44659481 cattattacttatcacatatagcgctatattatatgcaaaaacacgtcaatgttgacttcat 44659420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 25497903 - 25497742
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||| ||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||    
T  25497903 tgcttcatgaagcgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcaactttaacacatgattct 25497804  T
Q  365 cattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
     ||||||||||||| |  |||||||| |||||||||||||||||| |||| |||||||||||    
T  25497803 gattattacttatcacatatagcgctgtattatatgcaaaaacacgtcaacgttgacttcat 25497742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 42163564 - 42163725
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||| || |||| ||||||| |||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42163564 tgcttcatgaagcgggtttgatttcagtagaattgtctctttccgttctatagatattttctttatctataatctttagtcgactttaacacatgatcct 42163663  T
Q  365 cattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| |||| ||||| |||||    
T  42163664 cattattacttatcacatatagcgctatattatatgcaaaaacacgtcaacgttgatttcat 42163725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 421
Target Start/End: Original strand, 26457974 - 26458085
Alignment:
Q  313 tgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaaca-cat 409  Q
    ||||||| |||||||| ||| ||| ||||  | ||||||||| ||||||||||||||| ||  ||| |  |||||||||||||||||||||||||| |||    
T  26457974 tgtagatgttttctttttctgtaaccttttatagactttaattcatgatcctcattatcaccaatcacatatagcgctatattatatgcaaaaacatcat 26458073  T
Q  410 caatgttgactt 421  Q
    ||||||||||||    
T  26458074 caatgttgactt 26458085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 424
Target Start/End: Complemental strand, 23897498 - 23897384
Alignment:
Q  313 tgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattac-ttatcgc--atagcgctatattatatgcaaaaacacat 409  Q
    |||| ||||||||||||||||||||||||| | || |||||  |||||||||||| ||||| ||||| |  ||||| |||||||||||||||||  |  |    
T  23897498 tgtatatattttctttatctataatctttaatagattttaacccatgatcctcatcattacattatcacatatagcactatattatatgcaaaaggaagt 23897399  T
Q  410 caatgttgacttcat 424  Q
    |||||||||||||||    
T  23897398 caatgttgacttcat 23897384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 418
Target Start/End: Complemental strand, 34325108 - 34324985
Alignment:
Q  294 gaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgcata--gcgctata 391  Q
    ||||| ||||||||||| ||| | ||||||||||| |||||  |||||| | ||||| ||| ||| |||||||||||||||||||  |||  || |||||    
T  34325108 gaattgtctctttctat-ctgcatatattttctttttctat--tctttaatagacttgaattcattatcctcattattacttatcatatatagcactata 34325012  T
Q  392 ttatatgcaaaaacacatcaatgttga 418  Q
    |||||| ||||||||| || |||||||    
T  34325011 ttatatccaaaaacacgtcgatgttga 34324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 20193902 - 20194061
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20193902 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 20194001  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  20194002 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 20194061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 53980943 - 53980782
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  53980943 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 53980844  T
Q  365 cattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| |||| |||||||||||    
T  53980843 cattattacttatcacatatagcgctatattatatgcaaaaacacgtcaacgttgacttcat 53980782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 277 - 421
Target Start/End: Original strand, 12750208 - 12750353
Alignment:
Q  277 cgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattactta 376  Q
    ||||||| ||||||   ||||| ||||||||||| ||||||||||||||||| ||||||||||||| | ||||| ||| |||||||||| ||||||||||    
T  12750208 cgagtttgatttcactggaattgtctctttctat-ctgtagatattttctttttctataatctttaatagacttaaattcatgatcctcgttattactta 12750306  T
Q  377 tc--gcatagcgctatattatatgcaaaaacacatcaatgttgactt 421  Q
    ||    ||||||||||||||||| ||||||||| || | ||||||||    
T  12750307 tcatatatagcgctatattatatccaaaaacacgtcgacgttgactt 12750353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 407
Target Start/End: Original strand, 2925522 - 2925653
Alignment:
Q  277 cgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattactta 376  Q
    ||||||| ||||||   ||||| ||||||||||| ||  | ||||||||||| ||||||||||||| | ||||| ||| |||||||||||||||||||||    
T  2925522 cgagtttgatttcactggaattgtctctttctat-ctacaaatattttctttttctataatctttaatagacttgaattcatgatcctcattattactta 2925620  T
Q  377 tc--gcatagcgctatattatatgcaaaaacac 407  Q
    ||    ||||||||||||||||| |||||||||    
T  2925621 tcatatatagcgctatattatatccaaaaacac 2925653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 22747745 - 22747655
Alignment:
Q  318 atattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaaca 406  Q
    ||||||||||| ||||||||||||| | ||||| ||| ||||||||||||||||||||||| |  ||||||||||||||||| || |||||    
T  22747745 atattttctttttctataatctttaatagacttgaattcatgatcctcattattacttatcacatatagcgctatattatatccataaaca 22747655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 53528428 - 53528319
Alignment:
Q  317 gatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatg 414  Q
    |||||||||||||| ||||||||||| | |||||||| ||||||||||||||||| | |||| |  ||| | || | |||||||||||| ||| ||||||    
T  53528428 gatattttctttatttataatctttaatagactttaacacatgatcctcattatttcctatcacatataacactgtgttatatgcaaaatcacgtcaatg 53528329  T
Q  415 ttgacttcat 424  Q
    ||||||||||    
T  53528328 ttgacttcat 53528319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 421
Target Start/End: Complemental strand, 19569296 - 19569153
Alignment:
Q  279 agtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatc 378  Q
    ||||| ||||||  |||||| ||||||| |||| || ||||||||||||||||||| ||||||| | ||||||||  |||||| |||||||| || ||||    
T  19569296 agtttgatttcactagaattttctctttttatt-tgcagatattttctttatctattatctttaatagactttaacccatgattctcattataacgtatc 19569198  T
Q  379 gc--atagcgctatattatatgcaaaaacacatcaatgttgactt 421  Q
     |  |||| ||||||||||| | |||||||  |||| ||||||||    
T  19569197 acatatagtgctatattatacgtaaaaacatgtcaacgttgactt 19569153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 13989682 - 13989523
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13989682 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 13989583  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  13989582 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 13989523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 23343226 - 23343067
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23343226 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 23343127  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  23343126 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 23343067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 2169960 - 2170119
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2169960 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattatgtagatattttctttatctataatctttagtcgactttaacacatgatcct 2170059  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  2170060 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 2170119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 9725993 - 9726152
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  9725993 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagttgactttaacacatgatcct 9726092  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  9726093 cattattacttatcacatagtgctatattatatgcaaaaacacatcaacgttgacttcat 9726152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 265 - 397
Target Start/End: Original strand, 13981932 - 13982066
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||| ||||||| ||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  13981932 tgcttcatgaagcgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacccatgatcct 13982031  T
Q  365 cattattacttatcgc--atagcgctatattatat 397  Q
    |||||||||||||| |  |||||||||||||||||    
T  13982032 cattattacttatcacatatagcgctatattatat 13982066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 424
Target Start/End: Complemental strand, 17031896 - 17031765
Alignment:
Q  294 gaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttat--cgcatagcgctata 391  Q
    ||||| |||||||| ||| |||| |||||||||| |||||||||||| | | ||||||||  ||||||||||||||||||||||  |  ||||| |||||    
T  17031896 gaattgtctctttccatt-tgtacatattttcttcatctataatcttcaatagactttaactcatgatcctcattattacttataacatatagcactata 17031798  T
Q  392 ttatatgcaaaaacacatcaatgttgacttcat 424  Q
    | |||| |||||| || || | |||||||||||    
T  17031797 taatatccaaaaatacgtcgacgttgacttcat 17031765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 13925233 - 13925174
Alignment:
Q  318 atattttctttatctataatctttagtcgactttaatacatgatcctcattattacttat 377  Q
    ||||||||||| ||||||| ||||| | ||||| ||| ||||||||||||||||||||||    
T  13925233 atattttctttttctataaactttaatagacttgaattcatgatcctcattattacttat 13925174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 421
Target Start/End: Complemental strand, 10935883 - 10935792
Alignment:
Q  332 tataatctttagtcgactttaatacatgatcctcattattacttat--cgcatagcgctatattatatgcaaaaacacatcaatgttgactt 421  Q
    ||||||||||| | ||||| ||  ||||||||||||||||||||||  |  ||||||  |||||||||||| |||||| |||| ||||||||    
T  10935883 tataatctttaatagacttaaaaccatgatcctcattattacttattacatatagcgtcatattatatgcataaacacgtcaacgttgactt 10935792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 7870505 - 7870597
Alignment:
Q  332 tataatctttagtcgactttaatacatgatcctcattattacttatcgcata--gcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||| |||||| | ||||||||  |||||||||||||  |||||||| ||||  ||||||||||||||  |||||||| || | |||||||||||    
T  7870505 tatagtctttaatagactttaactcatgatcctcatt--tacttatcacatatagcgctatattatattaaaaaacacgtcgacgttgacttcat 7870597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 635132 - 634973
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  635132 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 635033  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  635032 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 634973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 7911272 - 7911431
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7911272 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 7911371  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  7911372 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 7911431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 14897633 - 14897474
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14897633 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 14897534  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  14897533 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 14897474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 22429196 - 22429037
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22429196 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 22429097  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  22429096 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 22429037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 22434790 - 22434631
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22434790 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 22434691  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  22434690 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 22434631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 43775840 - 43775681
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  43775840 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 43775741  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  43775740 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 43775681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 1524582 - 1524421
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1524582 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 1524483  T
Q  365 cattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| |||| |||||||||||    
T  1524482 cattattacttatcacatatagcgctatattatatgcaaaaacacgtcaacgttgacttcat 1524421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 14889484 - 14889408
Alignment:
Q  348 ctttaatacatgatcctcattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  14889484 ctttaacacatgatcctcattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 14889408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 265 - 329
Target Start/End: Complemental strand, 14889544 - 14889480
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttcttta 329  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||    
T  14889544 tgcttcatgaaacgagtttgatttcagtagaattatctctttccattctgtagatattttcttta 14889480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 424
Target Start/End: Complemental strand, 19088237 - 19088122
Alignment:
Q  311 tctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacaca 408  Q
    |||||||||||||||||| ||| ||||||||| | ||||  ||| ||||||||||||||||||||||| |  ||||||||||||||||| |||||||||     
T  19088237 tctgtagatattttctttttctgtaatctttaatagactagaattcatgatcctcattattacttatcacatatagcgctatattatatccaaaaacacg 19088138  T
Q  409 tcaatgttgacttcat 424  Q
    || |  ||||||||||    
T  19088137 tcgaccttgacttcat 19088122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 16444724 - 16444822
Alignment:
Q  311 tctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacac 407  Q
    |||| ||||||||||||| ||||||||||||| | ||||| ||| ||||||| ||||||||||||||| |  ||||||||||||||||| |||||||||    
T  16444724 tctgcagatattttctttttctataatctttaatagacttgaattcatgatcttcattattacttatcacatatagcgctatattatatccaaaaacac 16444822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 424
Target Start/End: Complemental strand, 25229599 - 25229489
Alignment:
Q  316 agatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacacatcaat 413  Q
    |||||||||| || ||||||||||||| | ||||| ||||||||||||||||||||| ||||| |  |||||||||||||||||  |||||||| |  ||    
T  25229599 agatattttccttttctataatctttaatagacttgaatacatgatcctcattattaattatcacatatagcgctatattatatctaaaaacacgttgat 25229500  T
Q  414 gttgacttcat 424  Q
    |||||||||||    
T  25229499 gttgacttcat 25229489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 318 - 383
Target Start/End: Original strand, 7386179 - 7386244
Alignment:
Q  318 atattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgcata 383  Q
    |||||||| || ||||||||||||| | ||||| ||| ||||||||||||||||||||||| ||||    
T  7386179 atattttccttttctataatctttaatagacttgaattcatgatcctcattattacttatcacata 7386244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 406
Target Start/End: Complemental strand, 11310850 - 11310713
Alignment:
Q  271 atgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattat 370  Q
    ||||||||||||| ||||||   ||||| |||||||| ||| || |  | ||||||||||||| | |||||| | ||||||||  |||||||||||||||    
T  11310850 atgaaacgagtttgatttcaccggaattgtctctttccatt-tgaaatttttttctttatctacagtctttaatagactttaac-catgatcctcattat 11310753  T
Q  371 tacttatcgc----atagcgctatattatatgcaaaaaca 406  Q
    |||||||| |    ||||||||||||||||| ||| ||||    
T  11310752 tacttatcacacatatagcgctatattatatccaataaca 11310713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 21290995 - 21291048
Alignment:
Q  356 catgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacac 407  Q
    ||||||||||||||||||||||| |  ||||||||| ||||||| |||||||||    
T  21290995 catgatcctcattattacttatcacatatagcgctagattatatccaaaaacac 21291048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 265 - 424
Target Start/End: Complemental strand, 15715472 - 15715313
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15715472 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 15715373  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  15715372 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 15715313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 265 - 421
Target Start/End: Original strand, 33494234 - 33494390
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||| ||||||| ||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  33494234 tgcttcatgaagcgagtttgatttcagtagaattgtctctttccattatgtagatattttctttatctataatctttagtcgactttagcacatgatcct 33494333  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgactt 421  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  33494334 cattattacttatcacataacgctatattatatgcaaaaacacatcaacgttgactt 33494390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 302 - 424
Target Start/End: Original strand, 3618099 - 3618223
Alignment:
Q  302 tctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgc 399  Q
    |||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||| |  ||| | |||||||||||||    
T  3618099 tctttctattttgtagatattttctttatctataatctttaatagactttaatacatggtcctcattattacttatcacatatatcactatattatatgc 3618198  T
Q  400 aaaaacacatcaatgttgacttcat 424  Q
    |||| ||| |||| |||||||||||    
T  3618199 aaaagcacgtcaacgttgacttcat 3618223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 22577485 - 22577645
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||| ||||| ||||||| ||||||   ||||| |||||||| ||| |||||||||||| ||||||||||||||||| |  |||||||  ||||||| |    
T  22577485 tgctttatgaagcgagtttgatttcattggaattgtctctttccatt-tgtagatattttatttatctataatctttaatatactttaactcatgatctt 22577583  T
Q  365 cattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    ||||||||||||||||  |||||||||||||||||||||||||||  |||  ||||||||||    
T  22577584 cattattacttatcgcatatagcgctatattatatgcaaaaacacgccaacattgacttcat 22577645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 409
Target Start/End: Original strand, 40275583 - 40275683
Alignment:
Q  311 tctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacaca 408  Q
    |||| ||||||||||||| ||||||||||||| | ||||||||  ||||||||||| ||||||||||| |  ||||||||||||||||| ||||||||||    
T  40275583 tctgcagatattttctttttctataatctttaatagactttaactcatgatcctcaatattacttatcacatatagcgctatattatattcaaaaacaca 40275682  T
Q  409 t 409  Q
    |    
T  40275683 t 40275683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 421
Target Start/End: Complemental strand, 26027495 - 26027383
Alignment:
Q  311 tctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacaca 408  Q
    |||| |||||||||||||  |||||||||||| | ||||| ||| ||| ||||||||||| |||| || |  |||||||| |||||||| |||||||||     
T  26027495 tctgcagatattttcttttcctataatctttaatagacttgaattcatcatcctcattatcacttgtcacatatagcgctttattatatccaaaaacacg 26027396  T
Q  409 tcaatgttgactt 421  Q
    || | ||||||||    
T  26027395 tcgacgttgactt 26027383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 370
Target Start/End: Original strand, 49626392 - 49626449
Alignment:
Q  313 tgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattat 370  Q
    |||||||| ||| ||||||||||||||||| |  ||||||||||||||||||||||||    
T  49626392 tgtagatactttatttatctataatctttaataaactttaatacatgatcctcattat 49626449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 267 - 424
Target Start/End: Original strand, 28368293 - 28368450
Alignment:
Q  267 cttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctca 366  Q
    ||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28368293 cttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcctca 28368392  T
Q  367 ttattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28368393 ttattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 28368450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 30958833 - 30958992
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30958833 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattatgtagatattttctttatctataatctttagtcgactttaacacatgatcct 30958932  T
Q  365 cattattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  30958933 cattattacttatcacatagcgctatattatatgcaaaaacacatcaacgttgacttcat 30958992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 265 - 424
Target Start/End: Original strand, 1532975 - 1533136
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1532975 tgcttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcct 1533074  T
Q  365 cattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||| |||| |||||||||||    
T  1533075 cattattatttatcacatatagcgctatattatatgcaaaaacacgtcaacgttgacttcat 1533136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 424
Target Start/End: Original strand, 25105782 - 25105897
Alignment:
Q  311 tctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacaca 408  Q
    |||| ||||| ||||||| ||||||||||||| | || || ||  ||||||||||||||||||||||| |  ||||||||||||||||| |||||||||     
T  25105782 tctgcagatactttctttttctataatctttaatagatttgaaatcatgatcctcattattacttatcacatatagcgctatattatatccaaaaacacg 25105881  T
Q  409 tcaatgttgacttcat 424  Q
    || | ||||| |||||    
T  25105882 tcgacgttgatttcat 25105897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 424
Target Start/End: Original strand, 25164875 - 25164990
Alignment:
Q  311 tctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacaca 408  Q
    |||| ||||| ||||||| ||||||||||||| | || || ||  ||||||||||||||||||||||| |  ||||||||||||||||| |||||||||     
T  25164875 tctgcagatactttctttttctataatctttaatagatttgaaatcatgatcctcattattacttatcacatatagcgctatattatatccaaaaacacg 25164974  T
Q  409 tcaatgttgacttcat 424  Q
    || | ||||| |||||    
T  25164975 tcgacgttgatttcat 25164990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 18084624 - 18084701
Alignment:
Q  346 gactttaatacatgatcctcattattacttatc--gcatagcgctatattatatgcaaaaacacatcaatgttgactt 421  Q
    ||||| ||| |||||||||||||||||||||||    ||||||||||||||||| ||||||||| || | ||||||||    
T  18084624 gacttgaattcatgatcctcattattacttatcatatatagcgctatattatatccaaaaacacgtcgacgttgactt 18084701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 421
Target Start/End: Original strand, 26460681 - 26460714
Alignment:
Q  388 tatattatatgcaaaaacacatcaatgttgactt 421  Q
    ||||| ||||||||||||||||||||||||||||    
T  26460681 tatatgatatgcaaaaacacatcaatgttgactt 26460714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 14851490 - 14851333
Alignment:
Q  267 cttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctca 366  Q
    ||||||||||||||||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14851490 cttcatgaaacgagtttgatttcagtagaattgtctctttccattctgtagatattttctttatctataatctttagtcgactttaacacatgatcctca 14851391  T
Q  367 ttattacttatcgcatagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    |||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||    
T  14851390 ttattacttatcacatagcgctatattatatgcaaaaacacatctacgtttacttcat 14851333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 318 - 424
Target Start/End: Original strand, 19442492 - 19442600
Alignment:
Q  318 atattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaacacatcaatgt 415  Q
    ||||||||||| ||||||||||||| | ||||| ||| ||||||||||||| ||||||||| |  |||| | |||||||||| ||||||||| || ||||    
T  19442492 atattttctttgtctataatctttaatagacttgaattcatgatcctcattgttacttatcacatatagtgttatattatatccaaaaacacgtcgatgt 19442591  T
Q  416 tgacttcat 424  Q
    |||||||||    
T  19442592 tgacttcat 19442600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 397
Target Start/End: Original strand, 14462086 - 14462168
Alignment:
Q  316 agatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatat 397  Q
    ||||||||||||| ||||||||||||| | ||||||||  ||||||| ||||||||||||||| |  |||||||||||||||||    
T  14462086 agatattttcttt-tctataatctttaatagactttaactcatgatcttcattattacttatcacatatagcgctatattatat 14462168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 383
Target Start/End: Complemental strand, 6931909 - 6931792
Alignment:
Q  265 tgcttcatgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcct 364  Q
    ||||||||||| ||||||| ||||||  |||||| | ||||| |  | |||| |||||||| ||||| |||| ||||| | || |||||  |||||||||    
T  6931909 tgcttcatgaagcgagtttgatttcactagaattctgtctttttcatttgtaaatattttcattatcaataa-ctttaatagaatttaactcatgatcct 6931811  T
Q  365 cattattacttatcgcata 383  Q
    |||||||||||||| ||||    
T  6931810 cattattacttatcacata 6931792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 424
Target Start/End: Original strand, 17271452 - 17271598
Alignment:
Q  278 gagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttat 377  Q
    |||||| ||||||  |||||| ||| ||| |||| |||| |||||||| ||||||||||| |||| | ||||||||  | | ||| |||||||||||||     
T  17271452 gagtttgatttcaatagaattgtctatttttatt-tgtaaatattttcattatctataat-tttaatagactttaaacccttatcatcattattacttac 17271549  T
Q  378 cgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    | |  |||||| |||||||||| ||||||||| ||||  ||||||||||    
T  17271550 cacatatagcgttatattatatacaaaaacacgtcaacattgacttcat 17271598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 18728 - 18583
Alignment:
Q  277 cgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattactta 376  Q
    ||||||| ||||||   ||||| |||||||| || ||| ||||||||||||| ||||||||||||| | ||||| ||| |||||||||||||||||||||    
T  18728 cgagtttgatttcactggaattgtctctttccat-ctgcagatattttctttttctataatctttaatagacttgaattcatgatcctcattattactta 18630  T
Q  377 tc--gcatagcgctatattatatgcaaaaacacatcaatgttgactt 421  Q
    ||    ||||||||||||||||| |||| |||| ||||  |||||||    
T  18629 tcagatatagcgctatattatatccaaagacacgtcaacattgactt 18583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 28896 - 28751
Alignment:
Q  277 cgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattactta 376  Q
    ||||||| ||||||   ||||| |||||||| || ||| ||||||||||||| ||||||||||||| | ||||| ||| |||||||||||||||||||||    
T  28896 cgagtttgatttcactggaattgtctctttccat-ctgcagatattttctttttctataatctttaatagacttgaattcatgatcctcattattactta 28798  T
Q  377 tc--gcatagcgctatattatatgcaaaaacacatcaatgttgactt 421  Q
    ||    ||||||||||||||||| |||| |||| ||||  |||||||    
T  28797 tcagatatagcgctatattatatccaaagacacgtcaacattgactt 28751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 406
Target Start/End: Complemental strand, 10757 - 10665
Alignment:
Q  316 agatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatcgc--atagcgctatattatatgcaaaaaca 406  Q
    ||||||||||||| ||||||||||||  | ||||||||| ||||||||||||||||||  ||| |  ||||||||||||||||||||||||||    
T  10757 agatattttctttttctataatcttttatagactttaattcatgatcctcattattaccaatcacatatagcgctatattatatgcaaaaaca 10665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 424
Target Start/End: Complemental strand, 17906464 - 17906318
Alignment:
Q  278 gagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttat 377  Q
    |||||| ||||||  |||||| |||||||  ||| |||| |||||||| |||||||||| ||||| | ||||||||  ||||||||||||||||||||||    
T  17906464 gagtttgatttcaatagaattttctcttttcatt-tgtaaatattttcattatctataa-ctttaatagactttaaaccatgatcctcattattacttat 17906367  T
Q  378 cgc--atagcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    | |  ||||||||||||||||| ||||||||| || |  ||||||||||    
T  17906366 cacatatagcgctatattatattcaaaaacacgtcgactttgacttcat 17906318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 11685526 - 11685609
Alignment:
Q  294 gaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattacttatc 378  Q
    |||||||||||||||||| |||||||||||| |||||||||||| |||| | ||||| |   || ||||||||||||||||||||    
T  11685526 gaattatctctttctatt-tgtagatattttatttatctataatatttaatagacttcagctcaagatcctcattattacttatc 11685609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 421
Target Start/End: Complemental strand, 29542134 - 29541989
Alignment:
Q  277 cgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattattactta 376  Q
    ||||||| ||||||   ||||| |||||||| || ||| ||||||||| ||| ||||||||||||  | ||||||||| ||||||||||||||| ||  |    
T  29542134 cgagtttgatttcacaggaattgtctctttccat-ctgcagatatttttttt-tctataatcttttatagactttaattcatgatcctcattatcaccaa 29542037  T
Q  377 tcgc--atagcgctatattatatgcaaaaaca-catcaatgttgactt 421  Q
    || |  ||||| |||||||||||||||||||| |||||| ||||||||    
T  29542036 tcacatatagctctatattatatgcaaaaacatcatcaacgttgactt 29541989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 424
Target Start/End: Complemental strand, 10727 - 10575
Alignment:
Q  272 tgaaacgagtttaatttcaggagaattatctctttctattctgtagatattttctttatctataatctttagtcgactttaatacatgatcctcattatt 371  Q
    |||| ||||||| ||||||   ||||| |||||||  ||| |||| |||||||| |||||||| | ||||| | ||||||||  ||| ||||||||||||    
T  10727 tgaagcgagtttgatttcacttgaattgtctcttttcatt-tgtaaatattttcattatctatga-ctttaatagactttaactcattatcctcattatt 10630  T
Q  372 acttatcgcata--gcgctatattatatgcaaaaacacatcaatgttgacttcat 424  Q
    ||||||| ||||  |||||||||||||| ||||||||| || | ||| |||||||    
T  10629 acttatcacatatagcgctatattatatccaaaaacacgtcgacgttaacttcat 10575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University