View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_high_6 (Length: 422)
Name: NF1249_high_6
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 99 - 411
Target Start/End: Original strand, 259312 - 259624
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnngtttatttctgacatataaagaattgttgagcc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
259312 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa-gtttatttctgacatataaagaattgttgagcc |
259410 |
T |
|
| Q |
199 |
ctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
259411 |
ctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaa |
259510 |
T |
|
| Q |
299 |
tattgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
259511 |
tattgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgt |
259610 |
T |
|
| Q |
398 |
acacttctgcctat |
411 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
259611 |
acacgtctgcctat |
259624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 99 - 411
Target Start/End: Complemental strand, 656609 - 656297
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnngtttatttctgacatataaagaattgttgagcc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
656609 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa-gtttatttctgacatataaagaattgttgagcc |
656511 |
T |
|
| Q |
199 |
ctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656510 |
ctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaa |
656411 |
T |
|
| Q |
299 |
tattgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
656410 |
tattgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgt |
656311 |
T |
|
| Q |
398 |
acacttctgcctat |
411 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
656310 |
acacgtctgcctat |
656297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 99 - 411
Target Start/End: Complemental strand, 842344 - 842032
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnngtttatttctgacatataaagaattgttgagcc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
842344 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttaaaaaaaaa-gtttatttctgacatataaagaattgttgagcc |
842246 |
T |
|
| Q |
199 |
ctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
842245 |
ctattcagatcgaggagagtaagagagcattttatcctattatttggatttgtgtttgagaagtgagattaaattactctaaacgtgctttagtgataaa |
842146 |
T |
|
| Q |
299 |
tattgatatttgactaatttgtcatttacatccatcgacctaattctctctatttgactattttttcaaatgcaaacaat-aactcattgcatttgttgt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
842145 |
tattgatatttgactaatttgtcatttacatccatcgacttaattctctctatttgactattttttcaaatgcaaacaataaactcattgcatttgttgt |
842046 |
T |
|
| Q |
398 |
acacttctgcctat |
411 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
842045 |
acacgtctgcctat |
842032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University