View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_1 (Length: 654)
Name: NF1249_low_1
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 139 - 626
Target Start/End: Complemental strand, 5740245 - 5739756
Alignment:
| Q |
139 |
aataatatggctaaagataataagcaacaacaattaaatacaaaatactttatgaattatgagataacattatttaccaaaacataacataagcattaaa |
238 |
Q |
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| T |
5740245 |
aataatatggctaaagataataagcaacaacaattaaatacaaaatgctttatgaattatgagataacattatttaccaaaacataacataagcattaaa |
5740146 |
T |
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| Q |
239 |
acatgcatacaaaccttttgaagtttaataaaacgagacccatccatggttaacttaatcctaaaagttgatcgcaaaaactaattataacatcacccac |
338 |
Q |
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| T |
5740145 |
acatgcatacaaaccttttgaagtttaataaaacgagacccatccatggttaacttaatcctaaaagttgatcgcaaaaactaattataacatcacccac |
5740046 |
T |
|
| Q |
339 |
tggataaaaggatccttaattacccaccaataatgtttaaatatatgattcacatgttgcaccaaaacgtagtttgctagacaagaaaaagatacgtgag |
438 |
Q |
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| T |
5740045 |
tggataaaaggatccttaattacccaccaataatgtttaaatatatgattcacatgttgcaccaaaacctagtttgctagacaagaaaaagatacgtgag |
5739946 |
T |
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| Q |
439 |
aaaatagatggaaaattagaagagaataaga--annnnnnnnnagattggaaagaagaaaaatattatatgtaactttttccttctttacactagaaaat |
536 |
Q |
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| T |
5739945 |
aaaatagatggaaaattagaagagaatgagattttatttttttagattggaaagaagaaaaatattatatgtaactttttccttctttacactagaaaat |
5739846 |
T |
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| Q |
537 |
ggggagataatgcatcttatttatttgatgagattacccttcttattccaggacccttaacttatgttattcttcttaatgccagttcct |
626 |
Q |
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| T |
5739845 |
ggggagataatgcatcttatttatttgatgagattacccttcttattccaggacccctaacttatgttattcttcttaatgccagttcct |
5739756 |
T |
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