View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_100 (Length: 242)
Name: NF1249_low_100
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_100 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 32339956 - 32339815
Alignment:
| Q |
24 |
aagcataggcgaagaggcatgaacataa--ggtttaacaa-caattagggacaccatataacatgaagaaactgaaagcatggatttcacattggcatga |
120 |
Q |
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| T |
32339956 |
aagcaaaggcgaagcggcatgaacataacaggtttaacaaacaattagggacaacatataacatgaagaaactgaaagcatggatttcacattggcataa |
32339857 |
T |
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| Q |
121 |
acataacagatttcacactggtttaacaacataacaggtttc |
162 |
Q |
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| T |
32339856 |
acataacaggtttcacactggtttaacaacataacaggtttc |
32339815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 32339801 - 32339748
Alignment:
| Q |
148 |
aacataacaggtttcatattcggttaacaacagagcaggtttcacattgtcatg |
201 |
Q |
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| T |
32339801 |
aacataacaggtttcatattcggttaacaacatagcaggtttcacattgtcatg |
32339748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 32339814 - 32339758
Alignment:
| Q |
107 |
tcacattggcatgaacataacagatttcacactggtttaacaacataacaggtttca |
163 |
Q |
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| T |
32339814 |
tcacattggcatgaacataacaggtttcatattcggttaacaacatagcaggtttca |
32339758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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