View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_102 (Length: 239)
Name: NF1249_low_102
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 41624358 - 41624489
Alignment:
| Q |
1 |
gactccaacgtttagctcattactttgctaatggtcttgagataagattggctgccgagacgccatcatatcagcctcttgatgtggcaactgctggaga |
100 |
Q |
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| T |
41624358 |
gactccaacgtttagctcattactttgctaatggtcttgagataagattggctgccgagacgccatcatatcagcctctttatgtggcaactgctggaga |
41624457 |
T |
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| Q |
101 |
tatgttgaaagcttacaaactatttgttactg |
132 |
Q |
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| T |
41624458 |
tatgttgaaagcttacaaactatttgttactg |
41624489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 41627319 - 41627448
Alignment:
| Q |
1 |
gactccaacgtttagctcattactttgctaatggtcttgagataagattggctgccgagacgccatcatatcagcctcttgatgtggcaactgctggaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41627319 |
gactccaacgtttagctcattactttgctaatggtcttgagataagattggctgctgagacgccatcatatcagcctcttgatgtggcaactgctggaga |
41627418 |
T |
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| Q |
101 |
tatgttgaaagcttacaaactatttgttac |
130 |
Q |
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| T |
41627419 |
tatgttgaaagcttacaaactatttgttac |
41627448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 41621023 - 41621141
Alignment:
| Q |
12 |
ttagctcattactttgctaatggtcttgagataagattggctgccgagacgccatcatatcagcctcttgatgtggcaactgctggagatatgttgaaag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| ||| |||||||| | ||||||||||||||||||||||| |
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| T |
41621023 |
ttagctcattactttgctaatggtcttgagataagatttgctgccgagattccatcgtatatgccgcttgatgtagtaactgctggagatatgttgaaag |
41621122 |
T |
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| Q |
112 |
cttacaaactatttgttac |
130 |
Q |
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| T |
41621123 |
cttacaaactattcgttac |
41621141 |
T |
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