View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_105 (Length: 229)
Name: NF1249_low_105
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_105 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 26431387 - 26431533
Alignment:
| Q |
1 |
atggtttcttcttcttcgccacatctcgaacaggtggaggaaggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagcca |
100 |
Q |
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| T |
26431387 |
atggtttcttcgtcttcgccacatcgcgaacaggttgaggaaggagccatctgacggtggtggagaagtgataaagtcgggatcgcattgtggcaagcca |
26431486 |
T |
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| Q |
101 |
gccaaatcaacagtttgaatttttcgggggtctttagctttcatatc |
147 |
Q |
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| T |
26431487 |
accaaatcaacagattgaatttttctgcggtctttagcttccatatc |
26431533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 11898606 - 11898460
Alignment:
| Q |
1 |
atggtttcttcttcttcgccacatctcgaacaggtggaggaaggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagcca |
100 |
Q |
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||||||||||| ||||| |||||||| ||||||||||| || || ||||| |||||||| | |||||| || | ||||||||| || || |||||||| | |
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| T |
11898606 |
atggtttcttcgtcttctccacatctggaacaggtggaagagggggccatatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagcta |
11898507 |
T |
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| Q |
101 |
gccaaatcaacagtttgaatttttcgggggtctttagctttcatatc |
147 |
Q |
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|||||| ||||||||||||||||| |||| ||||||||| |||||| |
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| T |
11898506 |
accaaataaacagtttgaatttttcaggggactttagcttccatatc |
11898460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 14652369 - 14652515
Alignment:
| Q |
1 |
atggtttcttcttcttcgccacatctcgaacaggtggaggaaggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagcca |
100 |
Q |
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| T |
14652369 |
atggtttcttcgtcttctccacatctcgaacaggtagaagagggagccatatgtcggtgttggagaagagatagagtcgggatcgcgttatggcaagcca |
14652468 |
T |
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| Q |
101 |
gccaaatcaacagtttgaatttttcgggggtctttagctttcatatc |
147 |
Q |
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| T |
14652469 |
gccaaatcaacagtttgaatttttcgggggattttagcttccatatc |
14652515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 53321344 - 53321255
Alignment:
| Q |
24 |
tctcgaacaggtggaggaaggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagccagccaaatcaacag |
113 |
Q |
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| T |
53321344 |
tctcgaacaggtggaggagggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagccagccaaatcaacag |
53321255 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 20286307 - 20286161
Alignment:
| Q |
1 |
atggtttcttcttcttcgccacatctcgaacaggtggaggaaggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagcca |
100 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||| || || ||||| |||||||| | |||||| || | ||||||||| || || |||||||| | |
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| T |
20286307 |
atggtttcttcgtcttctccacatctggaacaggtggaagagggggccatatgacggtgttcgagaagagacatagtcgggatggcgttatggcaagcta |
20286208 |
T |
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| Q |
101 |
gccaaatcaacagtttgaatttttcgggggtctttagctttcatatc |
147 |
Q |
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|||||| ||||||||||||||||| |||| ||||||||| |||||| |
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| T |
20286207 |
accaaatgaacagtttgaatttttcaggggactttagcttccatatc |
20286161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 24530383 - 24530277
Alignment:
| Q |
19 |
ccacatctcgaacaggtggaggaaggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagccagccaaatcaacagtttga |
118 |
Q |
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||||||||||||||||| | || ||||| || ||| ||||||||| || ||||||| || | || ||||||||| | |||||||||||||| |||| |
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| T |
24530383 |
ccacatctcgaacaggtagtagagggagctatgtgatggtgatggatcagggataaagctggaacagcgttgtggcaaactagccaaatcaacagcttga |
24530284 |
T |
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| Q |
119 |
atttttc |
125 |
Q |
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||||||| |
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| T |
24530283 |
atttttc |
24530277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 23131274 - 23131418
Alignment:
| Q |
1 |
atggtttcttcttcttcgccacatctcgaacaggtggaggaaggagccatttgacggtgatggagaagtgataaagtcgggatcgcattgtggcaagcca |
100 |
Q |
| |
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||||||||||| ||||| |||||||| ||||||||||| || || ||||| |||||||| | || ||| || | ||||| || || || |||||||| | |
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| T |
23131274 |
atggtttcttcgtcttctccacatctggaacaggtggaagagggggccatatgacggtgttcgaaaagagacattgtcggaatggcgttatggcaagcta |
23131373 |
T |
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| Q |
101 |
gccaaatcaacagtttgaatttttcgggggtctttagctttcata |
145 |
Q |
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|||||||||||||||||||||||| |||| ||||||||| |||| |
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| T |
23131374 |
accaaatcaacagtttgaatttttcaggggactttagcttccata |
23131418 |
T |
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