View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_11 (Length: 476)
Name: NF1249_low_11
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 58 - 395
Target Start/End: Original strand, 29020983 - 29021305
Alignment:
| Q |
58 |
ctccaaacaccaaagtcgtgggatgacctttattagaccaaacatagctaaaaacttgtttcatttcaattgcaacaatgaaaaattacataaagaattg |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29020983 |
ctccaaacaccaaagtcgtgggatgacctttattagaccaaacatagctaaaaatttgtttcatttcaattccaacaatgaaaaattacataaagaattg |
29021082 |
T |
|
| Q |
158 |
cagcatgttcccttggtatcattaacacgacaccaaacaacacgaagacaacaacaaataatctagtcacacaaagctaccctggacgtgaagagaagac |
257 |
Q |
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| T |
29021083 |
caacatgttcccttggtatcattaaca---------------cgaagacaacaacaaataatctagtcacacaaagctaccctggacgtgaagagaagac |
29021167 |
T |
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| Q |
258 |
ctttttattctttgcacataaaataaactcaaaagttaggtgtgtaaattcaaaacaaaaatacctttgaatacattttaattaatgtgcgttcaatact |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
29021168 |
ctttttattctttgcacataaaataaactcaaaagttaggtgtgtaaattcaaaacaaaaatacttttgaatacattttaactaatgtgcgttcaatact |
29021267 |
T |
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| Q |
358 |
attaaggttgcaaatagatttaatcatttgattcatct |
395 |
Q |
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| T |
29021268 |
attaaggttgcaaatagatttaatcatttggttcatct |
29021305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 28673982 - 28673859
Alignment:
| Q |
273 |
acataaaataaactcaaaagttaggtgtgtaaattcaaaacaaaaatacctttgaatacattttaattaatgtgcgttcaatact-attaaggttgcaaa |
371 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| |||||||||||||| |
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| T |
28673982 |
acataaaatcaacccaaaagttaggtgtgtaaattcaaaacaaaaatagttttgaatacattataactaatgtgcattcaatactgattaaggttgcaaa |
28673883 |
T |
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| Q |
372 |
tagatttaatcatttgattcatct |
395 |
Q |
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|||||||||| |||| |||||||| |
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| T |
28673882 |
tagatttaatgatttcattcatct |
28673859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 273 - 395
Target Start/End: Complemental strand, 28696197 - 28696074
Alignment:
| Q |
273 |
acataaaataaactcaaaagttaggtgtgtaaattcaaaacaaaaatacctttgaatacattttaattaatgtgcgttcaatact-attaaggttgcaaa |
371 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| ||||||||| |||||||||||||| |
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| T |
28696197 |
acataaaatcaacccaaaagttaggtgtgtaaattcaaaacaaaaatagttttgaatacattataactaatgtgcattcaatactgattaaggttgcaaa |
28696098 |
T |
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| Q |
372 |
tagatttaatcatttgattcatct |
395 |
Q |
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|||||||||| |||| |||||||| |
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| T |
28696097 |
tagatttaatgatttcattcatct |
28696074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 28674139 - 28674057
Alignment:
| Q |
137 |
gaaaaattacataaagaattgcagcatgttcccttggtatcattaacacgacaccaaacaacacgaagacaacaacaaataat |
219 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| | | ||||||| ||| ||||||| |
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| T |
28674139 |
gaaaaattacataaagaattgctgcatgttcccttcgtatcattaacacgacaaaaaactagatgaagacagcaagaaataat |
28674057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 28696354 - 28696272
Alignment:
| Q |
137 |
gaaaaattacataaagaattgcagcatgttcccttggtatcattaacacgacaccaaacaacacgaagacaacaacaaataat |
219 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| | | ||||||| ||| ||||||| |
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| T |
28696354 |
gaaaaattacataaagaattgctgcatgttcccttcgtatcattaacacgacaaaaaactagatgaagacagcaagaaataat |
28696272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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