View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_127 (Length: 214)

Name: NF1249_low_127
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_127
NF1249_low_127
[»] chr5 (1 HSPs)
chr5 (1-117)||(20932848-20932964)
[»] scaffold0177 (1 HSPs)
scaffold0177 (1-119)||(33606-33724)
[»] chr4 (1 HSPs)
chr4 (1-119)||(14224887-14225005)
[»] scaffold1407 (1 HSPs)
scaffold1407 (1-119)||(111-227)
[»] chr1 (1 HSPs)
chr1 (1-119)||(18486565-18486681)
[»] scaffold0035 (1 HSPs)
scaffold0035 (3-117)||(96312-96423)
[»] scaffold0453 (1 HSPs)
scaffold0453 (1-119)||(13099-13215)
[»] chr7 (1 HSPs)
chr7 (1-119)||(15934065-15934181)
[»] scaffold0029 (2 HSPs)
scaffold0029 (49-119)||(87178-87248)
scaffold0029 (1-33)||(87267-87299)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 20932964 - 20932848
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20932964 tgttacaccgtatagactaaggcatttattttcttttttttatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 20932865  T
Q  101 caatcgacgaaatcgaa 117  Q
    |||||||||||||||||    
T  20932864 caatcgacgaaatcgaa 20932848  T

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Target: scaffold0177 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 33606 - 33724
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33606 tgttacaccgtatagactaaggcatttattttcctttttttatctttattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 33705  T
Q  101 caatcgacgaaatcgaacg 119  Q
    |||||||||||||||||||    
T  33706 caatcgacgaaatcgaacg 33724  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 14224887 - 14225005
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14224887 tgttacaccgtatagactaaggcatttattttcctttttttatctttattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 14224986  T
Q  101 caatcgacgaaatcgaacg 119  Q
    |||||||||||||||||||    
T  14224987 caatcgacgaaatcgaacg 14225005  T

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Target: scaffold1407 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 227 - 111
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  227 tgttacaccgtatagactaaggcatttattttctttttt--atctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 130  T
Q  101 caatcgacgaaatcgaacg 119  Q
    |||||||||||||||||||    
T  129 caatcgacgaaatcgaacg 111  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 18486681 - 18486565
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||||||||||||||||||||||||||||         | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18486681 tgttacaccgtatagactaaggcatttattttcttttttt--tttctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 18486584  T
Q  101 caatcgacgaaatcgaacg 119  Q
    |||||||||||||||||||    
T  18486583 caatcgacgaaatcgaacg 18486565  T

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Target: scaffold0035 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 96423 - 96312
Alignment:
Q  3 ttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgacca 102  Q
    |||||||||||||||||||||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  96423 ttacaccgtatagactaaggcatttattttctcttt---atctcttttcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcaacca 96327  T
Q  103 atcgacgaaatcgaa 117  Q
    |||||||||||||||    
T  96326 atcgacgaaatcgaa 96312  T

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Target: scaffold0453 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 13099 - 13215
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctattcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgac 100  Q
    |||||||| ||||||||||||||||||||||||        |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||    
T  13099 tgttacactgtatagactaaggcatttattttctttttt--atctctattcgtcgattatatgccaaatactcgatcctctgaggacaacctagagcaac 13196  T
Q  101 caatcgacgaaatcgaacg 119  Q
    |||||||||||||||||||    
T  13197 caatcgacgaaatcgaacg 13215  T

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Target: chr7 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 15934065 - 15934181
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttcnnnnnnnnatctctatt-cgtcgattatatgccaagtactcgatcctctgaggacaatctagagcga 99  Q
    |||||||||||||||||||||||||||||||||        |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15934065 tgttacaccgtatagactaaggcatttattttcttttt---atctctttttcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcaa 15934161  T
Q  100 ccaatcgacgaaatcgaacg 119  Q
    ||||| ||||||||||||||    
T  15934162 ccaattgacgaaatcgaacg 15934181  T

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Target: scaffold0029 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 87248 - 87178
Alignment:
Q  49 ttcgtcgattatatgccaagtactcgatcctctgaggacaatctagagcgaccaatcgacgaaatcgaacg 119  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  87248 ttcgtcgattatatgccaagtactcgatcatctgaggacaatctagagcaaccaatcgacgaaatcgaacg 87178  T

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Target: scaffold0029; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 87299 - 87267
Alignment:
Q  1 tgttacaccgtatagactaaggcatttattttc 33  Q
    |||||||||||||||||||||||||||||||||    
T  87299 tgttacaccgtatagactaaggcatttattttc 87267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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