View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_13 (Length: 465)

Name: NF1249_low_13
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_13
NF1249_low_13
[»] chr4 (5 HSPs)
chr4 (86-377)||(37174174-37174466)
chr4 (392-428)||(37174430-37174466)
chr4 (253-299)||(55015139-55015185)
chr4 (263-312)||(470324-470373)
chr4 (260-313)||(12263257-12263310)
[»] chr5 (4 HSPs)
chr5 (254-327)||(40445974-40446047)
chr5 (279-323)||(15953926-15953970)
chr5 (263-313)||(13547452-13547502)
chr5 (256-324)||(7112588-7112656)
[»] chr8 (3 HSPs)
chr8 (258-325)||(35149261-35149328)
chr8 (258-319)||(10320495-10320556)
chr8 (260-324)||(16027037-16027101)
[»] chr6 (5 HSPs)
chr6 (247-325)||(8138448-8138526)
chr6 (263-312)||(29431465-29431514)
chr6 (260-307)||(6503271-6503318)
chr6 (255-312)||(17177944-17178001)
chr6 (260-324)||(23629840-23629904)
[»] chr1 (3 HSPs)
chr1 (256-305)||(33175274-33175323)
chr1 (260-321)||(41974758-41974819)
chr1 (246-325)||(36467014-36467093)
[»] chr7 (3 HSPs)
chr7 (248-326)||(42336062-42336140)
chr7 (278-323)||(15335454-15335499)
chr7 (272-324)||(37451252-37451304)
[»] chr3 (2 HSPs)
chr3 (260-326)||(17035916-17035982)
chr3 (278-326)||(22365964-22366012)
[»] chr2 (4 HSPs)
chr2 (272-326)||(9389460-9389514)
chr2 (247-325)||(31837926-31838004)
chr2 (272-325)||(21482534-21482587)
chr2 (258-327)||(36436562-36436631)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 86 - 377
Target Start/End: Original strand, 37174174 - 37174466
Alignment:
Q  86 atgaatgtgtgatgtattttcttgattgtttgtttcgtaattttgttataaatgtgagtgcaatgtattataannnnnnnnc-ttttaaaaatgtaaatt 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||    
T  37174174 atgaatgtgtgatgtattttcttgattgtttgtttcgtaattttgttataaatgtgagtgcaatgtattataatttttttttattttaaaaatgtaaatt 37174273  T
Q  185 ctttaaaatatattagttgtggatatatgtgaatacttaacgatatatcaaatgnnnnnnnggtggttgtcgagatttgaacctcataccttacatacat 284  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||| |||| |||||  ||| ||| ||    
T  37174274 cttcaaaatatattagttgtggatatatgtgaatacttaacaatatatcaaatgtttttttggtggttgtcgagattcgaacttcatattttatatatat 37174373  T
Q  285 tatacattatccttatcaattgaactaaattcacgaggacatgatatatcaagtgtttgtggatactcattcattggtcatataaatatttaa 377  Q
    ||| ||||||||||||||||| | |||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37174374 tattcattatccttatcaattaagctaagttcacagagacatgatatatcaagtgtttgtggatactcattcattggtcatataaatatttaa 37174466  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 37174430 - 37174466
Alignment:
Q  392 ttgtggatactcattcattggtcatataaatatttaa 428  Q
    |||||||||||||||||||||||||||||||||||||    
T  37174430 ttgtggatactcattcattggtcatataaatatttaa 37174466  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 299
Target Start/End: Original strand, 55015139 - 55015185
Alignment:
Q  253 gtcgagatttgaacctcataccttacatacattatacattatcctta 299  Q
    ||||| |||||||||||| | |||||||| |||||||||||||||||    
T  55015139 gtcgaaatttgaacctcaaaacttacatatattatacattatcctta 55015185  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 470324 - 470373
Alignment:
Q  263 gaacctcataccttacatacattatacattatccttatcaattgaactaa 312  Q
    ||||||||||| ||||||| ||||||||||||| ||||||| ||| ||||    
T  470324 gaacctcatactttacatatattatacattatctttatcaactgagctaa 470373  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 12263310 - 12263257
Alignment:
Q  260 tttgaacctcataccttacatacattatacattatccttatcaattgaactaaa 313  Q
    ||||||||||| |||||||||| |||||||||| ||||| |||| ||| |||||    
T  12263310 tttgaacctcagaccttacatatattatacattgtccttgtcaactgagctaaa 12263257  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 327
Target Start/End: Complemental strand, 40446047 - 40445974
Alignment:
Q  254 tcgagatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggacatg 327  Q
    ||||||||||||||||| ||||| |||| ||||| |||| |||||||||| |||  |||| |||||||||||||    
T  40446047 tcgagatttgaacctcagaccttgcatatattatgcattgtccttatcaactgagttaaactcacgaggacatg 40445974  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 323
Target Start/End: Complemental strand, 15953970 - 15953926
Alignment:
Q  279 atacattatacattatccttatcaattgaactaaattcacgagga 323  Q
    |||||||||||||| | |||||||||||||||||| |||||||||    
T  15953970 atacattatacatttttcttatcaattgaactaaactcacgagga 15953926  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 313
Target Start/End: Complemental strand, 13547502 - 13547452
Alignment:
Q  263 gaacctcataccttacatacattatacattatccttatcaattgaactaaa 313  Q
    |||||||  |||||||||||||||| ||||||||||| ||||||| |||||    
T  13547502 gaacctcgaaccttacatacattatgcattatccttaccaattgagctaaa 13547452  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 7112656 - 7112588
Alignment:
Q  256 gagatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggac 324  Q
    ||||||||||||||| |||||||||| ||||||  |||||| || |||||||  |||  ||||||||||    
T  7112656 gagatttgaacctcagaccttacatatattatattttatccctaccaattgagttaagctcacgaggac 7112588  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 325
Target Start/End: Original strand, 35149261 - 35149328
Alignment:
Q  258 gatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggaca 325  Q
    |||||||||| || ||||||||||  ||||||||||||||||  |||||||||||  |||||||||||    
T  35149261 gatttgaaccccaaaccttacatattttatacattatccttactaattgaactaagctcacgaggaca 35149328  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 10320556 - 10320495
Alignment:
Q  258 gatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacg 319  Q
    |||| ||||||||||||||||||| ||||| |||||| |||||||| ||| ||||| |||||    
T  10320556 gattcgaacctcataccttacatatattatgcattattcttatcaactgagctaaactcacg 10320495  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 16027037 - 16027101
Alignment:
Q  260 tttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggac 324  Q
    |||||| |||| |||||||||| || ||||||||||| || |||||||  || ||||||||||||    
T  16027037 tttgaatctcagaccttacatatatgatacattatccctaccaattgagttagattcacgaggac 16027101  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 8138448 - 8138526
Alignment:
Q  247 gtggttgtcgagatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggaca 325  Q
    ||||| || ||| |||||||| || |||||||||| ||||| |||| | |||||||| ||| |||||||||||||||||    
T  8138448 gtggtggttgaggtttgaaccccagaccttacatatattatgcattgttcttatcaactgagctaaattcacgaggaca 8138526  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 29431514 - 29431465
Alignment:
Q  263 gaacctcataccttacatacattatacattatccttatcaattgaactaa 312  Q
    |||||||| |||||||||||||||| |||| |||||||||| ||||||||    
T  29431514 gaacctcagaccttacatacattatgcattgtccttatcaaatgaactaa 29431465  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 6503318 - 6503271
Alignment:
Q  260 tttgaacctcataccttacatacattatacattatccttatcaattga 307  Q
    |||||||| || |||||||||| ||||||||||||||||| |||||||    
T  6503318 tttgaaccccaaaccttacatatattatacattatccttaacaattga 6503271  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 17177944 - 17178001
Alignment:
Q  255 cgagatttgaacctcataccttacatacattatacattatccttatcaattgaactaa 312  Q
    ||||||| ||||||||||||||||||| ||||| |||| ||||||  |||||| ||||    
T  17177944 cgagattcgaacctcataccttacatatattatgcattttccttactaattgagctaa 17178001  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 324
Target Start/End: Original strand, 23629840 - 23629904
Alignment:
Q  260 tttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggac 324  Q
    ||||||| ||||||||| |||| ||||| |||| || ||| ||||||| |||| |||||||||||    
T  23629840 tttgaacttcataccttgcatatattatgcattgtcattaccaattgagctaagttcacgaggac 23629904  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 256 - 305
Target Start/End: Complemental strand, 33175323 - 33175274
Alignment:
Q  256 gagatttgaacctcataccttacatacattatacattatccttatcaatt 305  Q
    |||||||||||||||||||||||||| ||||| |||| ||| ||||||||    
T  33175323 gagatttgaacctcataccttacatatattatgcattgtccatatcaatt 33175274  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 41974819 - 41974758
Alignment:
Q  260 tttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgag 321  Q
    ||||||||||| ||||| |||| ||||| |||||||| |||||| ||||||||| |||||||    
T  41974819 tttgaacctcaaaccttgcatatattatgcattatccctatcaactgaactaaactcacgag 41974758  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 36467014 - 36467093
Alignment:
Q  246 ggtggttgtcgagatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggaca 325  Q
    |||||| |||| ||||||||||| ||||||| |||| ||||| |||| ||| ||||||||||| |||  |||| ||||||    
T  36467014 ggtggtggtcgggatttgaaccttataccttgcatatattatgcattgtccatatcaattgaattaagctcacaaggaca 36467093  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 42336140 - 42336062
Alignment:
Q  248 tggttgtcgagatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggacat 326  Q
    |||| ||||||||| ||||| |  ||||| |||  ||||| |||| |||||||||| ||| ||||||||||||||||||    
T  42336140 tggtggtcgagattcgaaccccggaccttgcatgtattatgcattgtccttatcaactgagctaaattcacgaggacat 42336062  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 15335454 - 15335499
Alignment:
Q  278 catacattatacattatccttatcaattgaactaaattcacgagga 323  Q
    |||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  15335454 catatattatgcattattcttatcatttgaactaaattcacgagga 15335499  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 37451252 - 37451304
Alignment:
Q  272 accttacatacattatacattatccttatcaattgaactaaattcacgaggac 324  Q
    |||||||||| ||||| ||||||||||||||| ||| ||||| ||||| ||||    
T  37451252 accttacatatattatgcattatccttatcaactgagctaaactcacggggac 37451304  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 17035916 - 17035982
Alignment:
Q  260 tttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggacat 326  Q
    |||||||||||  ||||||||| ||||||||||||||||| ||| | |  |||||||||||| ||||    
T  17035916 tttgaacctcaggccttacatatattatacattatccttaccaactaagttaaattcacgagaacat 17035982  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 22366012 - 22365964
Alignment:
Q  278 catacattatacattatccttatcaattgaactaaattcacgaggacat 326  Q
    |||| ||||||||||||| ||||||| |||||||| ||||||| |||||    
T  22366012 catatattatacattatctttatcaactgaactaagttcacgatgacat 22365964  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 9389514 - 9389460
Alignment:
Q  272 accttacatacattatacattatccttatcaattgaactaaattcacgaggacat 326  Q
    ||||| |||| |||||||||||||||||||||||||  |||| ||||| ||||||    
T  9389514 accttgcatatattatacattatccttatcaattgagttaaactcacgtggacat 9389460  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 31837926 - 31838004
Alignment:
Q  247 gtggttgtcgagatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggaca 325  Q
    ||||| |||||| |||||| | |  |||||||||| |||||||||||||| || |||||||  ||| ||||||||||||    
T  31837926 gtggtggtcgaggtttgaatcccgaaccttacatatattatacattatccataccaattgagttaagttcacgaggaca 31838004  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 21482534 - 21482587
Alignment:
Q  272 accttacatacattatacattatccttatcaattgaactaaattcacgaggaca 325  Q
    ||||| |||| ||||||||||||||||| ||| ||| ||||| |||||||||||    
T  21482534 accttgcatatattatacattatccttaccaactgagctaaactcacgaggaca 21482587  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 36436562 - 36436631
Alignment:
Q  258 gatttgaacctcataccttacatacattatacattatccttatcaattgaactaaattcacgaggacatg 327  Q
    ||||||||||||| | |||||||| |||||||||| | |||| ||| ||||||||| | | |||||||||    
T  36436562 gatttgaacctcagatcttacatatattatacatttttcttaccaactgaactaaacttaagaggacatg 36436631  T

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