View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_132 (Length: 210)
Name: NF1249_low_132
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_132 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 45225881 - 45226003
Alignment:
| Q |
1 |
ccacagagtaattccaatccctgttttcatatgagttccaaataacttgcccgatctgccatcaacaaatcataacttcttttacacaggtgggtaacat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45225881 |
ccacagagtaattccaatccctgttttcatatgagttccaaataacttgcctgatctgccatcaacaaatcataacttcttttacacaggtgggtaacat |
45225980 |
T |
|
| Q |
101 |
gttagtggaaatcccaggattca |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
45225981 |
gttagtggaaatcccaggattca |
45226003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University