View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_136 (Length: 208)
Name: NF1249_low_136
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_136 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 2930942 - 2930839
Alignment:
| Q |
16 |
acaaagcactatttccattagcttcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2930942 |
acaaagcactatttccattagcttcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
2930843 |
T |
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| Q |
116 |
aagt |
119 |
Q |
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|||| |
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| T |
2930842 |
aagt |
2930839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 2917354 - 2917251
Alignment:
| Q |
16 |
acaaagcactatttccattagcttcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
115 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2917354 |
acaaagcactatttccattagcatcaacaaatacaacagaataagcatcaactgcagtcaaaaacaaacgtgatccaccttcttcagaattgaacatttg |
2917255 |
T |
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| Q |
116 |
aagt |
119 |
Q |
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|||| |
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| T |
2917254 |
aagt |
2917251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 24555310 - 24555243
Alignment:
| Q |
39 |
tcaacaaatagaacagaataaacatcaattgcagtcaaaaacaaacgtgatccaccttcttcagaatt |
106 |
Q |
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|||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |
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| T |
24555310 |
tcaacaaatacaacagaataagcattaattgcagtcaaaatcaaacgtgatccaccttcaccagaatt |
24555243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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