View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_14 (Length: 461)
Name: NF1249_low_14
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_14 |
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| [»] scaffold0117 (2 HSPs) |
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Alignment Details
Target: scaffold0117 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 30 - 449
Target Start/End: Complemental strand, 15227 - 14808
Alignment:
| Q |
30 |
tattcatggaggaagtatggttccaaaccaattaagggaacaccacatccaaggtgagtgatgattgatttatagccttatagccgttgatttatttgac |
129 |
Q |
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| T |
15227 |
tattcatggaggaagtatggttccaaaccaattaagggaacaccacatccaaggtgagtgatgattgatttatagccttatagccgttgatttatttgac |
15128 |
T |
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| Q |
130 |
tattgtcaatggaatgtttaataagattagattttgttttgtttatttcaggggttattataggtgcactatgtctaaaaattctccagctaggaaaagg |
229 |
Q |
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| T |
15127 |
tattgtcaatggaatgtttaataaggttagattttgttttgtttatttcaggggttattataggtgcacgatgtctaaaaattgtccagctaggaaaagg |
15028 |
T |
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| Q |
230 |
gtggagaaagcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatcaccaccagtccttcgccgatacggtgctccatcaaatcttct |
329 |
Q |
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| T |
15027 |
gtggagaaagcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatcaccaccagtccttcgccgatacggtgctccttcaaatcttct |
14928 |
T |
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| Q |
330 |
tcttaatccacttctctatttattcatgttgcatctattgatttattttcttttgttacatgtgtttctttaattttagcggttaacagttttcacctct |
429 |
Q |
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| T |
14927 |
tcttaatccacttctctatttattcatgttgcatctattgatttattttcttttgttgtatgtgtttctttaattttagcggttaacagttttcacctct |
14828 |
T |
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| Q |
430 |
tggaacagttatacgatatt |
449 |
Q |
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| T |
14827 |
tggaacagttatacgatatt |
14808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 448
Target Start/End: Complemental strand, 17614 - 17535
Alignment:
| Q |
370 |
atttattttcttttgttac-atgtgtttctttaattttagcggttaacagttttcacctcttggaacagttatacgatat |
448 |
Q |
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| T |
17614 |
atttattttcttttgttagtatgtgttcgtttaatttcagctgctaacagttttcacctcttggaatagttatgcgatat |
17535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 50355415 - 50355168
Alignment:
| Q |
30 |
tattcatggaggaagtatggttccaaaccaattaagggaacaccacatccaaggtgagtgatgattgatttatagccttatagccgttgatttatttgac |
129 |
Q |
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| T |
50355415 |
tattcatggaggaagtatggttccaaaccgattaagggaacaccacatccaaggtgagtgatgattgatttatagccgttga-----ttatttagttgac |
50355321 |
T |
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| Q |
130 |
tattgtcaatggaatgtttaataagattagattttgttttgtttatttcaggggttattataggtgcactatgtctaaaaattctccagctaggaaaagg |
229 |
Q |
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| T |
50355320 |
tattttctaaaaa----tacataaggtt-gaatttgttttgtttatttcaggggctattataggtgcactgtgtctaaaaattgtccagctaggaaaagg |
50355226 |
T |
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| Q |
230 |
gtggagaaagcaaaggatgatccaaatatactggttgtaacgtatgagtttgagcatc |
287 |
Q |
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| T |
50355225 |
gtggagaaagcaaaggatgatccaaatatcctggttgtaacgtacgagtttgagcatc |
50355168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 319 - 439
Target Start/End: Complemental strand, 10279227 - 10279108
Alignment:
| Q |
319 |
tcaaatcttcttcttaatccacttctctatttattcatgttgcatctattgatttattttcttttgttacatgtgtttctttaattttagcggttaacag |
418 |
Q |
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|||||||| ||||| |||| |||||||| || |||||||||||||||||| |||||||||||||| || | | |||| ||| ||||| |||| |||||| |
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| T |
10279227 |
tcaaatctccttctcaatcaacttctctcttcattcatgttgcatctattaatttattttcttttatt-cgtatgttccttaaatttctgcggctaacag |
10279129 |
T |
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| Q |
419 |
ttttcacctcttggaacagtt |
439 |
Q |
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| T |
10279128 |
tttttacctattggaacagtt |
10279108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 439
Target Start/End: Complemental strand, 10267408 - 10267331
Alignment:
| Q |
363 |
tctattgatttattttcttttgttac-atgtgtttctttaattttagcggttaacagttttcacctcttggaacagtt |
439 |
Q |
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| T |
10267408 |
tctattaatttattttcttttattcgtatgtgatcctttaatttcagcggctaacagttttcacctgttgtaacagtt |
10267331 |
T |
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