View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_141 (Length: 204)
Name: NF1249_low_141
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_141 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 40549799 - 40549690
Alignment:
| Q |
1 |
attccttaatcaaaatcttgaatttctttgttgttatgaaatactatttcatgtatgtttcannnnnnnnnnngcaggccagtgttgatgttactatatc |
100 |
Q |
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| T |
40549799 |
attccttaatcaaaatcttgaatttctttgttgttatgaaatactatttcatgtatgtttca------tttttgcaggccagtgttgatgttactatatc |
40549706 |
T |
|
| Q |
101 |
ctttgtaagtataatc |
116 |
Q |
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|||||||||||||||| |
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| T |
40549705 |
ctttgtaagtataatc |
40549690 |
T |
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