View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_142 (Length: 203)
Name: NF1249_low_142
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_142 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 40549799 - 40549690
Alignment:
| Q |
1 |
attccttaatcaaaatcttgaatttctttgttgttatgaaatactatttcatgtatgtttcannnnnnnnnngcaggccagtgttgatgttactatatcc |
100 |
Q |
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| T |
40549799 |
attccttaatcaaaatcttgaatttctttgttgttatgaaatactatttcatgtatgtttca-----tttttgcaggccagtgttgatgttactatatcc |
40549705 |
T |
|
| Q |
101 |
tttgtaagtataatc |
115 |
Q |
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||||||||||||||| |
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| T |
40549704 |
tttgtaagtataatc |
40549690 |
T |
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