View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_146 (Length: 203)
Name: NF1249_low_146
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_146 |
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Alignment Details
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 23730567 - 23730454
Alignment:
| Q |
1 |
taaggtatcgtggaacaacaatgacttgttcaaattccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23730567 |
taaggtatcgtggaacaacaatgacttgttcaaattccgttacactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa |
23730468 |
T |
|
| Q |
101 |
ctgtcttacagaat |
114 |
Q |
| |
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|||||||||||||| |
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| T |
23730467 |
ctgtcttacagaat |
23730454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23686965 - 23686855
Alignment:
| Q |
1 |
taaggtatcgtggaacaacaatgacttgttcaaatt-ccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
23686965 |
taaggtatcgtggaacaacaatgacttgttcaaatttccgttacactacagcgactaattcataacgctgaaaaaaaatatgaaatgaaaaggaatacaa |
23686866 |
T |
|
| Q |
100 |
actgtcttaca |
110 |
Q |
| |
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||||||||||| |
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|
| T |
23686865 |
actgtcttaca |
23686855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 52 - 114
Target Start/End: Complemental strand, 23733389 - 23733327
Alignment:
| Q |
52 |
gactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaactgtcttacagaat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23733389 |
gactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaactgtcttacagaat |
23733327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23646001 - 23645900
Alignment:
| Q |
1 |
taaggtatcgtggaacaacaatgacttgttcaaattccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa |
100 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||| | | ||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
23646001 |
taaggtatcgcagaacaatagtgacttgttcaaattctgttatgctatagcgacgaattcataacgctgaataaaattatgatatggaaaggaatacaaa |
23645902 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
|
|| |
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|
| T |
23645901 |
ct |
23645900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23812573 - 23812674
Alignment:
| Q |
1 |
taaggtatcgtggaacaacaatgacttgttcaaattccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa |
100 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||| | | ||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
23812573 |
taaggtatcgcagaacaatagtgacttgttcaaattctgttatgctatagcgacgaattcataacgctgaataaaattatgatatggaaaggaatacaaa |
23812672 |
T |
|
| Q |
101 |
ct |
102 |
Q |
| |
|
|| |
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|
| T |
23812673 |
ct |
23812674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 23779635 - 23779692
Alignment:
| Q |
45 |
ctacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaact |
102 |
Q |
| |
|
||||||||| ||||||||| |||| |||| || ||||| ||| ||||||||||||||| |
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|
| T |
23779635 |
ctacagcgagtaattcatatcgctaaatacaattatgatatgtaaaggaatacaaact |
23779692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 23866588 - 23866645
Alignment:
| Q |
45 |
ctacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaact |
102 |
Q |
| |
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||||||||| ||||||||| |||| |||| || ||||| ||| ||||||||||||||| |
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|
| T |
23866588 |
ctacagcgagtaattcatatcgctaaatacaattatgatatgtaaaggaatacaaact |
23866645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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