View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_148 (Length: 202)
Name: NF1249_low_148
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_148 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 40785026 - 40785141
Alignment:
| Q |
1 |
gatcaatttggtaaataaaatatatatggagaactatttttatcaatcaacagcctagctatccacctgctcgtatcatatcaggtaggcactcacaaat |
100 |
Q |
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| T |
40785026 |
gatcaatttggtaaataaaatatatatggagaactatttttatgaatcaacagcctagctatccacctgctcatatcatatcaggtaggcactcacaaat |
40785125 |
T |
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| Q |
101 |
aattgacctcaagtat |
116 |
Q |
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| T |
40785126 |
aattgacctcaagtat |
40785141 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 40792376 - 40792432
Alignment:
| Q |
2 |
atcaatttggtaaataaaatatatatggagaactatttttatcaatcaacagcctagc |
59 |
Q |
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||||||||||||| || ||||||||| |||||||||| || |||||||||||||||| |
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| T |
40792376 |
atcaatttggtaa-tagtatatatatgtagaactatttctaccaatcaacagcctagc |
40792432 |
T |
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