View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_149 (Length: 201)
Name: NF1249_low_149
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_149 |
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Alignment Details
Target: chr5 (Bit Score: 87; Significance: 6e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 37069043 - 37069129
Alignment:
| Q |
33 |
tgtgagtcaagttcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgagggatgaataccctttg |
119 |
Q |
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| T |
37069043 |
tgtgagtcaagttcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgagggatgaataccctttg |
37069129 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 37064847 - 37064952
Alignment:
| Q |
12 |
tcagcttcatctgtcttcaactgtgagtcaagttcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgagggatgaat |
111 |
Q |
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| T |
37064847 |
tcagcttcttctgtcttcaactgtgagtcaagttcttcaagttgaaaatgttacggagaatcttagaggtttcatgg--atcctaatttgagggataaat |
37064944 |
T |
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| Q |
112 |
accctttg |
119 |
Q |
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| T |
37064945 |
accctttg |
37064952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 119
Target Start/End: Original strand, 37062552 - 37062643
Alignment:
| Q |
26 |
cttcaactgtgagtcaagttcttcaaggagaaaatgttagggagaatcttagaggtttcatggatatcctaatttgagggatgaataccctttg |
119 |
Q |
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| T |
37062552 |
cttcaactgtgaatcaagttcttgaaggagacaatgttagggagaagcttagaggtttcatgg--atccaaatttgagagatgaatatcctttg |
37062643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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