View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_15 (Length: 443)
Name: NF1249_low_15
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_15 |
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| [»] scaffold0703 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 139 - 416
Target Start/End: Complemental strand, 54423934 - 54423658
Alignment:
| Q |
139 |
agggtgataatccg-aatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgt |
237 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
54423934 |
agggtgataatctggaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcg--tttctaaggtcctggtcaatcgtcttcgt |
54423837 |
T |
|
| Q |
238 |
ccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcata |
337 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54423836 |
ccacttattaacaaatggatttcccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcata |
54423737 |
T |
|
| Q |
338 |
tgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattg |
416 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54423736 |
tgcgctgcaaaacaaaagaaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattg |
54423658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 276 - 412
Target Start/End: Original strand, 20127319 - 20127455
Alignment:
| Q |
276 |
ctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
20127319 |
ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca |
20127418 |
T |
|
| Q |
376 |
ctcaaacttgacatatccaaggcattcgatagtgtaa |
412 |
Q |
| |
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|| |||||||| |||||||||||||| |||||||||| |
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| T |
20127419 |
ctaaaacttgatatatccaaggcatttgatagtgtaa |
20127455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 410
Target Start/End: Complemental strand, 27645764 - 27645619
Alignment:
| Q |
265 |
gaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag |
364 |
Q |
| |
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||||||||||| || || || || ||||| |||||||||||||| |||| || || ||| | | |||||||||||||||||||| ||||| ||||| | |
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| T |
27645764 |
gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg |
27645665 |
T |
|
| Q |
365 |
gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
410 |
Q |
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||||||||||||| |||||||| || || ||||| || |||||||| |
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| T |
27645664 |
gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgt |
27645619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 20120928 - 20121056
Alignment:
| Q |
152 |
gaatccatgcgggaccttcgacctatttctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaa |
251 |
Q |
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|
||||||||||| |||||||| |||||||||||||| ||||| | |||||||| | | ||||||||||| | ||||||||| | |||| | || ||||| |
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| T |
20120928 |
gaatccatgcgagaccttcggcctatttctctctgtaatgtactgtacaagattg--tctctaaggtccttgccaatcgtctccatccattaatcaacaa |
20121025 |
T |
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| Q |
252 |
atgaattttccaagaacaggcagcctttgtg |
282 |
Q |
| |
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||| |||| ||||||||| |||||||||||| |
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| T |
20121026 |
atggatttcccaagaacaagcagcctttgtg |
20121056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
| Q |
334 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
410 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || ||||| |
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| T |
12461121 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
12461045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 13190709 - 13190645
Alignment:
| Q |
283 |
cattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaa |
347 |
Q |
| |
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|||||||| || |||||||||||||| |||||||||| ||| ||||||| |||||||| ||||| |
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|
| T |
13190709 |
cattctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaa |
13190645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34431657 - 34431607
Alignment:
| Q |
1 |
tgtcagtgattcattatcatcctcatcagagtattgcttgtttctatatgc |
51 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34431657 |
tgtcagtgattcattatcatcctcatcagagtattgcttgtttctatatgc |
34431607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 9183133 - 9182994
Alignment:
| Q |
271 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
370 |
Q |
| |
|
||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| | ||||||||| |||||| | |
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| T |
9183133 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
9183034 |
T |
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| Q |
371 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
410 |
Q |
| |
|
| ||||| ||||||||||| || ||||| || |||||||| |
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| T |
9183033 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
9182994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 410
Target Start/End: Original strand, 11625140 - 11625279
Alignment:
| Q |
271 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
370 |
Q |
| |
|
||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| | || ||| ||||||||||||| | |||||||||| |||||| | |
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| T |
11625140 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg |
11625239 |
T |
|
| Q |
371 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
410 |
Q |
| |
|
| ||||| ||||||||||| || ||||| || |||||||| |
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| T |
11625240 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
11625279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 271 - 410
Target Start/End: Complemental strand, 10161356 - 10161217
Alignment:
| Q |
271 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
370 |
Q |
| |
|
||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| | ||||||||| |||||| | |
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|
| T |
10161356 |
gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg |
10161257 |
T |
|
| Q |
371 |
tggctctcaaacttgacatatccaaggcattcgatagtgt |
410 |
Q |
| |
|
| ||||| ||||||||||| || ||||| || |||||||| |
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|
| T |
10161256 |
tagctctaaaacttgacatttcgaaggcttttgatagtgt |
10161217 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
| Q |
334 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
410 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || ||||| |
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|
| T |
16860983 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt |
16861059 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 391
Target Start/End: Complemental strand, 21741103 - 21740989
Alignment:
| Q |
277 |
tttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctc |
376 |
Q |
| |
|
||||| ||||||| ||| || ||||| ||||| || | |||| |||| |||||||||||||||| || ||| | ||||| || | ||||||||||||| |
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|
| T |
21741103 |
tttgtccattctctctccattatggacaatgctctgatggcatacgaaattcttcatcatatgcgttgtaaatcgaaagggaagaaaggtgaggtggctt |
21741004 |
T |
|
| Q |
377 |
tcaaacttgacatat |
391 |
Q |
| |
|
| |||||||| |||| |
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|
| T |
21741003 |
tgaaacttgatatat |
21740989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 410
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
| Q |
334 |
catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt |
410 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || ||||| |
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|
| T |
2013 |
catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt |
1937 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 398
Target Start/End: Complemental strand, 239092 - 238965
Alignment:
| Q |
271 |
gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg |
370 |
Q |
| |
|
||||||||||| | ||| | || |||||||||||||| ||| |||| || ||| ||||||| |||||| ||||| | |||||| ||||| || |||| |
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|
| T |
239092 |
gcagcctttgttccatctagatccatcatggataatgctctatcagcctttgaaattcttcactttatgcgatgcaagaaaaaaggtaaaattggcgagg |
238993 |
T |
|
| Q |
371 |
tggctctcaaacttgacatatccaaggc |
398 |
Q |
| |
|
||||| | || ||||| ||||||||||| |
|
|
| T |
238992 |
tggctttaaagcttgatatatccaaggc |
238965 |
T |
|
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