View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_17 (Length: 433)
Name: NF1249_low_17
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 85 - 337
Target Start/End: Original strand, 38814244 - 38814496
Alignment:
| Q |
85 |
atgaagaggcctcatttgagtttttgtggtgttgatgaattagcttttgtggtatgtaagcttgatttacggaagtacaggcctttaaaaacggcgtatg |
184 |
Q |
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| T |
38814244 |
atgaagaggcctcatttgagtttttgtggtgttgatgaattagcttttgtggtatgtaaacttgatttacggaagtacaggcctttaaaaacggtgtatg |
38814343 |
T |
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| Q |
185 |
actggggctgcctaagcaaagaacttgccaaacttgctactgttaatgtttattcttattacaagattgggagcaaattgcttcaatgtgatgttgcagg |
284 |
Q |
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| T |
38814344 |
actggggttgcctaagcaaagaacttgccaaacttgctactgttaatgtttattcttattacaagattgggagcaaattgcttcaatgtgatgttgcagg |
38814443 |
T |
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| Q |
285 |
tgggcgtaatgctgcaaatggatcctctcaagcggttgcaagaaagagaaaca |
337 |
Q |
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| T |
38814444 |
tgggcgtaatgctgcaaatggatcctctcaagcggttgcaagaaagagaaaca |
38814496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 38818764 - 38818812
Alignment:
| Q |
199 |
agcaaagaacttgccaaacttgctactgttaatgtttattcttattaca |
247 |
Q |
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| T |
38818764 |
agcaaagaacttgctaaacttgctactgttaatgtttactcttattaca |
38818812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 38822921 - 38822974
Alignment:
| Q |
214 |
aaacttgctactgttaatgtttattcttattacaagattgggagcaaattgctt |
267 |
Q |
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| T |
38822921 |
aaacttgctactgttaatgtttactcttactacaagattgggagtacattgctt |
38822974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 38831395 - 38831456
Alignment:
| Q |
206 |
aacttgccaaacttgctactgttaatgtttattcttattacaagattgggagcaaattgctt |
267 |
Q |
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| T |
38831395 |
aacttgctaaacttgctactattaatgtttactcttactacatgatcgggagcacattgctt |
38831456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 38822801 - 38822835
Alignment:
| Q |
100 |
ttgagtttttgtggtgttgatgaattagcttttgt |
134 |
Q |
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| T |
38822801 |
ttgagtttttgtggtcttgatgaattagcttttgt |
38822835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 38818652 - 38818684
Alignment:
| Q |
93 |
gcctcatttgagtttttgtggtgttgatgaatt |
125 |
Q |
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| T |
38818652 |
gcctcgtttgagtttttgtggtgttgatgaatt |
38818684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 17198154 - 17198090
Alignment:
| Q |
203 |
aagaacttgccaaacttgctactgttaatgtttattcttattacaagattgggagcaaattgctt |
267 |
Q |
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| T |
17198154 |
aagaacttgctaaacttgctactgttaatgtttactcttatcataagattgggagtaaattgctt |
17198090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 11392632 - 11392576
Alignment:
| Q |
203 |
aagaacttgccaaacttgctactgttaatgtttattcttattacaagattgggagca |
259 |
Q |
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| T |
11392632 |
aagaacttgctagacttgctactgttaatgtttattcttatcacaaaattggtagca |
11392576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 11386644 - 11386588
Alignment:
| Q |
203 |
aagaacttgccaaacttgctactgttaatgtttattcttattacaagattgggagca |
259 |
Q |
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|||||||||| | ||||||||||||||||||||| |||||| |||| ||||| |||| |
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| T |
11386644 |
aagaacttgctagacttgctactgttaatgtttactcttatcacaaaattggtagca |
11386588 |
T |
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