View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_19 (Length: 416)
Name: NF1249_low_19
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 130 - 331
Target Start/End: Complemental strand, 11103649 - 11103450
Alignment:
| Q |
130 |
tacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggtacgtaacaaaatattacatttct |
229 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
11103649 |
tacatatattaattagatggaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggt--taaaaaaaatattacatttct |
11103552 |
T |
|
| Q |
230 |
atgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcac |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11103551 |
atgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcac |
11103452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 159 - 334
Target Start/End: Complemental strand, 11590066 - 11589893
Alignment:
| Q |
159 |
atatattaaaatcatacaatagcacaaatagg-ataactagattaaggtacgtaacaaaatattacatttctatgttgctctcatttgatgattttttgg |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11590066 |
atatattaaaatcatacaatagcacaaatagggataactagattaaggt---taaaaaaatattacatttctatgttgctctcatttgatgattttttgg |
11589970 |
T |
|
| Q |
258 |
ctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11589969 |
ctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgtacatgaggatcgtttcacctgaa |
11589893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 11115436 - 11115341
Alignment:
| Q |
214 |
aaaatattacatttctatgttgctctcatttgatgattttttggctatgtggagatagacacatcccaaagtagcaattaacaagactggaaaagtgta |
312 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
11115436 |
aaaatgttacatttccatgttgctctcatttgat---tttttggctatgtggagaaagacacatcccaaagtggctattaacaacactggaaaagtgta |
11115341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 11103425 - 11103352
Alignment:
| Q |
331 |
tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcata |
402 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
11103425 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcata |
11103352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 11589871 - 11589798
Alignment:
| Q |
331 |
tgaatattattatgttaattaatcagcattaaatagttaatgaaca--caaacatacaaaaagtgaaatgcata |
402 |
Q |
| |
|
||||||||||||||||||||||||| ||| || ||||||||||||| || |||||||||| ||||||||||| |
|
|
| T |
11589871 |
tgaatattattatgttaattaatcaacataaagtagttaatgaacaagcatgcatacaaaaaatgaaatgcata |
11589798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University