View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_2 (Length: 589)
Name: NF1249_low_2
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 78 - 562
Target Start/End: Complemental strand, 33902061 - 33901581
Alignment:
| Q |
78 |
gaagaatattaaaagtagaagaagccttgcctctgctgcagcaacaagttcatagaaatctttaactggcatattcttgaagagttttgcagttacaacc |
177 |
Q |
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| T |
33902061 |
gaagaatattaaaagtagaagaagccttgcctctgctgcagcaacaagttcatagaaatctttaactggcatattcttgaagagttttgtagttacaacc |
33901962 |
T |
|
| Q |
178 |
actggctttccaatagtgagagttcctgtcttatcgaacacaatgcaattcacctgaaaaattgtaagtaacaagttatatagtttcctactcttgaaat |
277 |
Q |
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| T |
33901961 |
actggcttcccaatagtgagagttcctgtcttatcgaacacaatgcaattcacctgaaaaattgtaagtaacaagtta----gtttcctactgttgaaat |
33901866 |
T |
|
| Q |
278 |
ggcaagttgagagaacaatggatgcatgcaattgccaatgttatttactcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttg |
377 |
Q |
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| T |
33901865 |
ggcaagttgagagaacaatggatgcatgcaattgccaatgttatttactcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttg |
33901766 |
T |
|
| Q |
378 |
agttgcaccaactccggtaccaaccatgaccgctgtaggagtggctaggcctagagcacaaggacaagctatgaccatgactgaaattccaaactgaagt |
477 |
Q |
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| T |
33901765 |
agttgcaccaactccggtaccaaccatgaccgctgtaggagtggctaggcctagagcacaaggacaagctatgaccatgactgaaattccaaactgaagt |
33901666 |
T |
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| Q |
478 |
gcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaattcaattttccagctacaaaccatgatatccatg |
562 |
Q |
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| T |
33901665 |
gcaagctcaaaactattcatagaagatggtatccatgattttgggtatgaatgcaattttccagctacaaaccatgatatccatg |
33901581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 326 - 562
Target Start/End: Complemental strand, 33919339 - 33919105
Alignment:
| Q |
326 |
tcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccggtaccaaccatgaccgctgtaggagtggctag |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | || |
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| T |
33919339 |
tcaccttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccagtaccaaccatgaccgctgtaggagtag--ag |
33919242 |
T |
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| Q |
426 |
gcctagagcacaaggacaagctatgaccatgactgaaattccaaactgaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggtat |
525 |
Q |
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| T |
33919241 |
gcctagagcacaaggacaagctatgaccatgactgaaattccaaactgaagtgcaagctcgaaattattcatagaagatggtatccatgattttgggtat |
33919142 |
T |
|
| Q |
526 |
gaattcaattttccagctacaaaccatgatatccatg |
562 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
33919141 |
gaatgcaattttccagctacaaaccatgatatccatg |
33919105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 328 - 524
Target Start/End: Original strand, 2780998 - 2781194
Alignment:
| Q |
328 |
accttgtgtgcactttctaatgcttggccacctttgatcaacacaccttgagttgcaccaactccggtaccaaccatgaccgctgtaggagtggctaggc |
427 |
Q |
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||||| ||||||||||| || ||||| || ||||||||||| ||||| |||| |||||||||||| || |||||||| || || ||||| ||||||| | |
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| T |
2780998 |
accttatgtgcactttccaaagcttgcccccctttgatcaatacaccctgagatgcaccaactccagttccaaccataacagcggtaggtgtggctaaac |
2781097 |
T |
|
| Q |
428 |
ctagagcacaaggacaagctatgaccatgactgaaattccaaactgaagtgcaagctcaaaactattcatagaagatggtatccatgattttgggta |
524 |
Q |
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| T |
2781098 |
ccaaagcacaagggcaagcaataaccatgacagatattccaaactgcagagcaagctcaaagctgtccatggaagacggaatccaagatttcgggta |
2781194 |
T |
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