View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_20 (Length: 414)
Name: NF1249_low_20
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 35723774 - 35723434
Alignment:
| Q |
1 |
cctttttccctattag-aaaaaatcacttgaaatcaattacataagaaaaatatgaaaacatctcggtcaacatgtcacattatcaaatttcaatgtcat |
99 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35723774 |
cctttttccctattaggaaaaaatcacttgaaatcagttacataataaaaatatgaaaacatctcagtcaacatgtcacattatcaaatttcaatgtcat |
35723675 |
T |
|
| Q |
100 |
aagatctaaatannnnnnnaacatgaaattaaatcgggtttaaagggaagtgtacaagaaaaaataagggtgcaaaaagcaagctaactcccacaaaaaa |
199 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35723674 |
aagatctaaacatttttttaacatgaaattaaattgggtttaaagggaagtgtacaagaaaaaataagggtgcaaaaagcaagccaactcccacaaaaaa |
35723575 |
T |
|
| Q |
200 |
gcaacctagggtttaagtactatcctaaccactaaacccaacccaccggttcggtggcaaacttaaaattaacaaaaaataaagagcgggatttgaaccc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35723574 |
gcaacctagggtttaagtactatcctaaccactaaacccaacccaccggttcggtggcaaactcaaaattaacaaaaaataaagagcgggatttgaaccc |
35723475 |
T |
|
| Q |
300 |
tcgtttcacaacacactccatttcatatcttcatctcactc |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35723474 |
tcgtttcacaacacactccatttcatatcttcatttcactc |
35723434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University