View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_21 (Length: 413)
Name: NF1249_low_21
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 108 - 314
Target Start/End: Original strand, 17154846 - 17155052
Alignment:
| Q |
108 |
ttagggtactttgatctttttagacgtggaaaaacannnnnnnnaagtgtaaataacaattttcaaacttgtttgatgaatgaacccaataaggcccaat |
207 |
Q |
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| T |
17154846 |
ttagggtattttgatctttttagacgtgggaaaacatttttttgaagtgtaaataacaattttcaaacttgtttgatgaaggaacccaataaggcccaat |
17154945 |
T |
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| Q |
208 |
acttgctcgtgaaatattattttcgtaatcaatataaaaggtcacatgaaaatgtacttcaataatttagtctataattaaatagattcacgaataatgg |
307 |
Q |
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| T |
17154946 |
acttgctcgtgaaatattattttcctaatcaatataaaaggtcacatgaaaatgtacttcaataatttagtctataattgaatagattcacgaataatgg |
17155045 |
T |
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| Q |
308 |
aactatt |
314 |
Q |
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| T |
17155046 |
aactatt |
17155052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 17154786 - 17154849
Alignment:
| Q |
16 |
attgctctcccacaccttcaataccccaacgacaattaattgtccttatctccttaacatttag |
79 |
Q |
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| T |
17154786 |
attgctctcccacaccttcaataccccaacaacagttaactgtccttatctccttaacatttag |
17154849 |
T |
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