View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_23 (Length: 411)
Name: NF1249_low_23
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 42 - 203
Target Start/End: Original strand, 20096789 - 20096950
Alignment:
| Q |
42 |
gaaacaacacatatatgacaaaagcaaagtgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagcaatattctttctcactttttgtctct |
141 |
Q |
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| T |
20096789 |
gaaacaacacatatatgacaaaagcaaagtgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagctatattctttctcaccttttgtctct |
20096888 |
T |
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| Q |
142 |
ttagcattataaggcttcgtatctcgtcgtgtttctcatggccttgggagcaatattactat |
203 |
Q |
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| T |
20096889 |
ttagcattataaggcttcgtatctcgtcgtgtttctcatggccttgggagcaatattactat |
20096950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 233 - 403
Target Start/End: Original strand, 20096947 - 20097119
Alignment:
| Q |
233 |
ctatgtttgttttcatttttatagatcagcaaaggtgacttaaaagacatgtaatttagacttttgttttggatgttgaagatgcacattactcatgtga |
332 |
Q |
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| T |
20096947 |
ctatgtttgctttcattttta--gatcagcaaaggtgatttaaaagacatgtaatttagacttttgttttggttgttgaagatgcacattactcatgtga |
20097044 |
T |
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| Q |
333 |
tgaggaaacttttatgtgtcat----ttcatgaagaagaagaacaagtgtcattacacacgagtttgcctatgat |
403 |
Q |
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| T |
20097045 |
tgaggaaacttttatgtgtcatttcattcatgaagaagaagaacaagtgtcattacacatgagtttgcctatgat |
20097119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 19883921 - 19883820
Alignment:
| Q |
42 |
gaaacaacacatatat----gacaaaagcaaagtgcaaaatgttcagtgctgagtgaaacttaagcttaagcaaaagcaatattctttctcactttttgt |
137 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||| |
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| T |
19883921 |
gaaacaacacatatatacgtgacaaaagcaaagtgcaatatgttcagtgttgagtgaaacttaagcttaagcaaaagttacatcctttctcactttttgt |
19883822 |
T |
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| Q |
138 |
ct |
139 |
Q |
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|| |
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| T |
19883821 |
ct |
19883820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 19883778 - 19883711
Alignment:
| Q |
185 |
ttgggagcaatattactatttatggttggataagttttcaaatattttctatgtttgttttcattttt |
252 |
Q |
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||||||||||||||| |||||||||||||| | |||||| ||||| ||||||| || ||||| |||| |
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| T |
19883778 |
ttgggagcaatattattatttatggttggaaattttttcacatattgtctatgtatggtttcactttt |
19883711 |
T |
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