View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_24 (Length: 390)
Name: NF1249_low_24
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 202 - 338
Target Start/End: Complemental strand, 21998353 - 21998217
Alignment:
| Q |
202 |
tctcataacccatatggccacgaccaaacctttggaactctgattatttgctgagtttgacgaccaatggtgaaataattagttgtgatgttcatatttt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21998353 |
tctcataacccatatggccacgaccaaacctttggaactctgattatttgctgagtttgacgaccaatggtgaaataagtagttgtgatgttcatatttt |
21998254 |
T |
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| Q |
302 |
caaatgaaaaattctaaaaacaataaagttaatatgt |
338 |
Q |
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||||||||||||||||||||||||| | ||||||||| |
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| T |
21998253 |
caaatgaaaaattctaaaaacaatagatttaatatgt |
21998217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 22084104 - 22083980
Alignment:
| Q |
202 |
tctcataacccatatggccacgaccaaacctttggaactctgattatttgctgagtttgacgaccaatggtgaaataattagttgtgatgttcatatttt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22084104 |
tctcataacccatatggccacgaccaaacctttggaactctgattatttgctgagtttgacgaccaatggtgaaatagttagttgtgatgttcatatttt |
22084005 |
T |
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| Q |
302 |
caaatgaaaaattctaaaaacaata |
326 |
Q |
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||||| ||||||||||||||||||| |
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| T |
22084004 |
caaataaaaaattctaaaaacaata |
22083980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 22084757 - 22084694
Alignment:
| Q |
141 |
tagttctcatataagttgtatcataaacatagattcacattaatcatatcattaaaggaattct |
204 |
Q |
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| T |
22084757 |
tagttctcatataagtcgtatcataaacatagattcacattaatcatatcattaaaggaattct |
22084694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 21998495 - 21998436
Alignment:
| Q |
145 |
tctcatataagttgtatcataaacatagattcacattaatcatatcattaaaggaattct |
204 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21998495 |
tctcgtataagtcatatcataaacatagattcacattaatcatatcattaaaggaattct |
21998436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 15303631 - 15303679
Alignment:
| Q |
143 |
gttctcatataagttgtatcataaacatagattcacattaatcatatca |
191 |
Q |
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|||||||||||||| ||| ||||| |||||| |||||||||||||||| |
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| T |
15303631 |
gttctcatataagtcatatgataaaaatagatccacattaatcatatca |
15303679 |
T |
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