View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_27 (Length: 376)

Name: NF1249_low_27
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_27
NF1249_low_27
[»] chr5 (4 HSPs)
chr5 (95-324)||(24317897-24318125)
chr5 (114-311)||(20550082-20550279)
chr5 (222-309)||(24187914-24188001)
chr5 (110-167)||(24187816-24187873)
[»] scaffold0008 (1 HSPs)
scaffold0008 (95-324)||(233426-233655)
[»] chr8 (2 HSPs)
chr8 (113-324)||(24537333-24537544)
chr8 (110-268)||(26825908-26826066)
[»] chr3 (3 HSPs)
chr3 (95-292)||(16230699-16230896)
chr3 (124-195)||(3398581-3398652)
chr3 (113-154)||(3387149-3387190)
[»] scaffold0427 (1 HSPs)
scaffold0427 (113-324)||(4758-4969)
[»] chr6 (1 HSPs)
chr6 (113-166)||(24253091-24253144)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 95 - 324
Target Start/End: Original strand, 24317897 - 24318125
Alignment:
Q  95 attattcttgaaagaaatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaagg 194  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  24317897 attattcttgaaagaaatttttctcgaaaatgcaattattgtgtgaaa-aggtaaccatggaatcaaccaaaagcacataatcaatggcaacttaaaagg 24317995  T
Q  195 actccgaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacct 294  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24317996 actcagaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgggatacct 24318095  T
Q  295 cgaatttcagcaagaagtagatctaaagcg 324  Q
    ||||||||||||||||||||||||||||||    
T  24318096 cgaatttcagcaagaagtagatctaaagcg 24318125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 311
Target Start/End: Original strand, 20550082 - 20550279
Alignment:
Q  114 tttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacataatct 213  Q
    ||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||| || |||||| | | ||  ||||  |||||||||| ||| |    
T  20550082 tttctcgaacttacaattattgtgtgaaataggtaaccatggactcaaccaaaagcacataaacaatggtaccaaatgaggagaccgaagaacaaaattt 20550181  T
Q  214 ggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaag 311  Q
     |||||| || | || ||| ||||||| || ||||||||||||| |||| ||||||| |||||||||||| |  ||||||| ||||| ||||||||||    
T  20550182 cgagcaattggtaaagttattaaagaatgtgaaggttactagttcttttatggagaagctggagaaagagccaggataccttgaattccagcaagaag 20550279  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 24187914 - 24188001
Alignment:
Q  222 tgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaaga 309  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||| ||||  |||| |||||| || ||||||| ||||||||||||||    
T  24187914 tgatcaaattactaaagaaggtgaaggttactagttcttttgtgaagaagttggaaaaagagccgggataccttgaatttcagcaaga 24188001  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 24187816 - 24187873
Alignment:
Q  110 aatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaa 167  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||    
T  24187816 aatttttctcgaacttgaaattattgtgtgaaataggtaaccattgaatcaaccaaaa 24187873  T

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Target: scaffold0008 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 95 - 324
Target Start/End: Complemental strand, 233655 - 233426
Alignment:
Q  95 attattcttgaaagaaatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaagg 194  Q
    ||||||||||  |||||||||||||||| ||||||||||||| |||||||||||| |||||| | ||| |||||||||||| ||||| ||  |||  |||    
T  233655 attattcttgttagaaatttttctcgaacttgcaattattgtctgaaataggtaatcatggactgaactaaaagcacacaaacaatgacatttaatgagg 233556  T
Q  195 actccgaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacct 294  Q
    |   ||||||||| ||| |||||||| || | |||||| |||||||||| ||||||||||||| |||||||||||| |||| ||||||| |  | |||||    
T  233555 agaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtacct 233456  T
Q  295 cgaatttcagcaagaagtagatctaaagcg 324  Q
    |||||| || || |||||||| || |||||    
T  233455 cgaattccatcatgaagtagagctgaagcg 233426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 113 - 324
Target Start/End: Complemental strand, 24537544 - 24537333
Alignment:
Q  113 ttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacataatc 212  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || || || ||||    || || || ||||    
T  24537544 ttttctcgaacctgcaattattgtgtgaaataggtaaccatggaatcaaccaaaaacacacgatcaatgacagctgaagaggagatggaggatcaaaatc 24537445  T
Q  213 tggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagt 312  Q
    | |||||| |||||| |||||| |||||||| ||||| |||  || ||||||||||||  ||||||||||| |  | ||||| |||||||||||||||||    
T  24537444 tagagcaagtgatcactttactcaagaaggtaaaggtgacttcttcttttgtggagaagttggagaaagagccagggtaccttgaatttcagcaagaagt 24537345  T
Q  313 agatctaaagcg 324  Q
    |||| |||||||    
T  24537344 agatttaaagcg 24537333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 110 - 268
Target Start/End: Original strand, 26825908 - 26826066
Alignment:
Q  110 aatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacata 209  Q
    ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||| |||  ||  |||   ||||||||||||    
T  26825908 aatttttttcgaagttgcaattattgtgtgaaataggtaacaatggaatcaaccaaaaggacaccaacaatgacaatcaatgaggcaaccgaagaacata 26826007  T
Q  210 atctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggag 268  Q
    || || ||||| |||| |||||| |||||||||| ||||||||||||| ||||||||||    
T  26826008 atttgaagcaattgataaatttattaaagaaggtgaaggttactagttcttttgtggag 26826066  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 95 - 292
Target Start/End: Original strand, 16230699 - 16230896
Alignment:
Q  95 attattcttgaaagaaatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaagg 194  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||||| ||  | |    
T  16230699 attattcttgtcagaaatttttctcgaacttgcaattattgtgtgaaataggtaaccatggactcaaccaaaagcacaaagacaatggcaacaaatgaag 16230798  T
Q  195 actccgaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatac 292  Q
    |   |||| |||| |||  ||||||| || | || |||||||||||||| ||||||||||||| |||||| || || |||||||||||| | ||||||    
T  16230799 agatcgaaaaacaaaattgggagcaattggtaaagttactaaagaaggtgaaggttactagttcttttgtagaaaagctggagaaagagccatgatac 16230896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 3398581 - 3398652
Alignment:
Q  124 ttgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaagga 195  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||| ||||    
T  3398581 ttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagagga 3398652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 3387149 - 3387190
Alignment:
Q  113 ttttctcgaaattgcaattattgtgtgaaataggtaaccatg 154  Q
    |||||||||| ||| |||||||||||||||||||||| ||||    
T  3387149 ttttctcgaatttgaaattattgtgtgaaataggtaatcatg 3387190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 113 - 324
Target Start/End: Original strand, 4758 - 4969
Alignment:
Q  113 ttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacataatc 212  Q
    |||||||||| |||||| ||| |||||||||| || | |||||||||||||||||   ||||| ||||| | |||||| ||||    |||||||| |||     
T  4758 ttttctcgaacttgcaactatggtgtgaaatatgttagcatggaatcaaccaaaaaggcacaagcaatgactactaaagaggagatggaagaacaaaatt 4857  T
Q  213 tggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagt 312  Q
     ||||||  |||||   | | | |||||||||||||| || | || |||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||    
T  4858 gggagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgggatacctcgaattttagcaagaagt 4957  T
Q  313 agatctaaagcg 324  Q
    |||| |||||||    
T  4958 agatataaagcg 4969  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 24253091 - 24253144
Alignment:
Q  113 ttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaa 166  Q
    |||||||||| |||  ||||||||||||||||||||| ||||||| ||||||||    
T  24253091 ttttctcgaacttgtgattattgtgtgaaataggtaatcatggaagcaaccaaa 24253144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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