View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_3 (Length: 581)
Name: NF1249_low_3
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Original strand, 544392 - 544866
Alignment:
| Q |
13 |
aatatggtgaaacatggacatattatacaaccctcaacaattgtgctttatggaaatttctggtgctttatttttcctgctaatgtaattaatcatctga |
112 |
Q |
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| T |
544392 |
aatatggtgaaacatggacatattatacaaccctcaacaattgtgctttatggaaatttctggtgctttatttttcctgctaatgtaattaatcatctga |
544491 |
T |
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| Q |
113 |
t-atcagacagtgacatattaacatgaggtgtagagaaatttacaaaaggtcagtatggcataaaaattgtgtgcactgatgaaaaatactcgtcttttg |
211 |
Q |
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| T |
544492 |
ttatcagacagtgacatattaacatgaggtgcagagaaatttacaaaaggtcagtatggcataaaaattgtgtgcactgatgaaaaatactcgtcttttg |
544591 |
T |
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| Q |
212 |
attagggagtgttattagagagggtatattccagttcctcaagcttctgttaaaaatttgattgacatggtgattgaatttcagaaggtttctttaacaa |
311 |
Q |
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| T |
544592 |
attagggattgttattagagagggtatattccagttcctcaagcttctgttaaaaatttgattgacatggtgattgaatttcagaaggtttctttaaca- |
544690 |
T |
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| Q |
312 |
ttaccgggcttggataacaaagcaactacgtttcctcaccatatgcgtaattttttgtataagaaaaatattagtaaattagtgattttggtagttcttc |
411 |
Q |
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| T |
544691 |
--accgggcttggataacaaagcaactacgtttcctcaccatatgcgtaattttttgtataagaaaaatattagtaaattagtgattttggtagttcttc |
544788 |
T |
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| Q |
412 |
gagattgtgtctcaacctctccttgttagaactctttcagtgtccctcaactcatcaacagagttgtctacttgtaag |
489 |
Q |
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| T |
544789 |
gagattgtgtctcaacctctccttgttagaactctttcagtgtccctcaactcatcaacagagttgtctacttgtaag |
544866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 544286 - 544324
Alignment:
| Q |
124 |
gacatattaacatgaggtgtagagaaatttacaaaaggt |
162 |
Q |
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| T |
544286 |
gacatattaacatgaggtgcagataaatttacaaaaggt |
544324 |
T |
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