View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_33 (Length: 360)
Name: NF1249_low_33
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 14119661 - 14119343
Alignment:
| Q |
18 |
cataggactattttgacgaatatttt-ataggagtaccaacattatgacatttcatcattaaaatatcaaagtatccatttactctaatttctttgaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14119661 |
cataggactattttgacgaatatttttataggagtaccaacattatgacatttcatcattaaaatatcaaagtatccatttactctaatttctttgaagc |
14119562 |
T |
|
| Q |
117 |
tatatcaagattactcattcagaaagtgattgcaatttcattttggtccacttctatgcacaacaggttataagggattctattgtcgggctaggaactg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14119561 |
tatatcaagattactcattcagaaagtgattgcaatttcattttggtccacttctatgcccaacaggttataagggattctattgtcgggctaggaactg |
14119462 |
T |
|
| Q |
217 |
atgaagattcactcaacagagcaattgtaactcgagctgaaatcgacttgttgaaagtgagattcgagtatgctaacatgtacaaatca---agtcttga |
313 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14119461 |
atgaagattcactcaacagagctattgtaactcgagctgaaatcgacttgttgaaagtgagattcgagtatgctaacatgtacaaatcaagtagtcttga |
14119362 |
T |
|
| Q |
314 |
tgatgatgtcattggagat |
332 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
14119361 |
tgaagatgtcattggagat |
14119343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 23 - 332
Target Start/End: Complemental strand, 14132739 - 14132428
Alignment:
| Q |
23 |
gactattttgacgaatatttt-ataggagtaccaacattatgacatttcatcattaaaatatcaaagtatccatttactctaatttctttgaagctatat |
121 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14132739 |
gactattttgacgaatatttttataggagtaccaacatggttgcatttcatctttaaaatatcaaagtatccatttactgtaatttctttgaagctatat |
14132640 |
T |
|
| Q |
122 |
caagattactcattcagaaagtgattgcaatttcattttggtccacttctatgcacaa-caggttataagggattctattgtcgggctaggaactgatga |
220 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14132639 |
caagattactcattcagaaaatgattgcaatctcatttcggttcacttctatgcacaaacaggttataagggattctattgtcgggctaggaactgatga |
14132540 |
T |
|
| Q |
221 |
agattcactcaacagagcaattgtaactcgagctgaaatcgacttgttgaaagtgagattcgagtatgctaacatgtacaaatcaagtcttgatgatgat |
320 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14132539 |
agattcactaaacagagctattgtaactcgagctgaaatcgacttgttgaaagtgagattcgagtatgctaacatgtacaaatcaagtcttgatgatgat |
14132440 |
T |
|
| Q |
321 |
gtcattggagat |
332 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14132439 |
gtcattggagat |
14132428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University