View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_35 (Length: 356)
Name: NF1249_low_35
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 161 - 354
Target Start/End: Complemental strand, 33824550 - 33824357
Alignment:
| Q |
161 |
tttttaacctgatctgggcatatttttatagtcaaagacaatattcatcttatctgattctctttcccacctctgacttttgtttagaaaattttcagtg |
260 |
Q |
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| T |
33824550 |
ttttttaccttatctgggcataattttaaagtcaaagacaatattcatcttatctgattctctttcccacctctgacttttgtttagaaaattttcagtg |
33824451 |
T |
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| Q |
261 |
cagaataaatttatgtatatttacatattaaactcatagtaaaaggatatgaggacattagtgcaggaaagaataatgcattgtacaattctct |
354 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33824450 |
cagaataaatgtatgtatatttacatattaaactcatagtaaaagaatatgaggacattagtggaggaaagaataatgcattgtacaattctct |
33824357 |
T |
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