View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_4 (Length: 566)
Name: NF1249_low_4
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 87 - 537
Target Start/End: Original strand, 9937564 - 9938014
Alignment:
| Q |
87 |
agaagttaagtttgccttctcatgtgacatttagccacaactagcatcacaaacttcgtttccaaacaacttgccccaaaattcaaattcaaataaaatt |
186 |
Q |
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| T |
9937564 |
agaagttaaatttgccttattatgtgacatttagccacaactagcatcacaaacttagtttccaaacaacttgccccaaaattcaatt------aaaatt |
9937657 |
T |
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| Q |
187 |
gttgtacaaagaaaacattcatgatttagtaagatgggacaattcattatattcaaacaaaaatgcaattaaatatgaacaccaatatcacctagtgtca |
286 |
Q |
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| T |
9937658 |
gttgtacaaagaaaacattcatgatttagtaagatgagacaattcattacattcaaacaaaaatgcaattaaatatgaacaccaatatcacctagcgtca |
9937757 |
T |
|
| Q |
287 |
gcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttctcatctcttgcacatgagtc-------nnnnnnnnnnaaatgacctaccacatta |
379 |
Q |
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| T |
9937758 |
gcatctgcatctcgcaagtaagcaatcaacgcatcgagtgccttctcatctcttgcacatgcgtctgtttttttttttttttaaatgacctaccaaatta |
9937857 |
T |
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| Q |
380 |
caaattcaaacacacaaaatgcaaaaacctaactaaccaaaaagaggaacactaactaaccaaattgacggatgcgagggtcctttgaagaagataagct |
479 |
Q |
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| T |
9937858 |
taaattcaaacacacaaaatgcaaaaacctaactaaccaaaaagaggaacactaactaaccaaattgacggatgcgagggt-ctttgaagaagataagct |
9937956 |
T |
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| Q |
480 |
aacccaccaaaattggtcgtggagagaatgaaacaggagatgaggagcacacttcaag |
537 |
Q |
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| T |
9937957 |
aacccacccaaattggtcgtggagagaatgaaacatgagacgaggagcacacttcaag |
9938014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 9336190 - 9336237
Alignment:
| Q |
284 |
tcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttc |
331 |
Q |
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| T |
9336190 |
tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc |
9336237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 278 - 333
Target Start/End: Original strand, 42364921 - 42364976
Alignment:
| Q |
278 |
ctagtgtcagcatctgcatctcgccagtaagcaatcaacgcatcgagtgccttctc |
333 |
Q |
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|||| ||||||||||||| ||||| ||||||||||||| ||||| ||||||||||| |
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| T |
42364921 |
ctagcgtcagcatctgcagctcgcaagtaagcaatcaatgcatcaagtgccttctc |
42364976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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