View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_45 (Length: 329)
Name: NF1249_low_45
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_45 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 12540214 - 12540348
Alignment:
| Q |
92 |
ataattaaagccggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttata |
191 |
Q |
| |
|
|||||| ||| ||||||||||||| || ||||||| ||||||||| |||||| ||| ||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
12540214 |
ataattgaagacggtcatcgtcctactacttccacattgaatgatatttttcgaggtttatgtctcagaggccagatttataaagcaattatgttttata |
12540313 |
T |
|
| Q |
192 |
agtacaccatactaaagggttttcagttgaacctt |
226 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12540314 |
attacaccatactaaagggttttcagttgaacctt |
12540348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 12533331 - 12533211
Alignment:
| Q |
104 |
ggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttataagtacaccatac |
203 |
Q |
| |
|
|||| ||||||| || ||||||| |||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12533331 |
ggtcgtcgtcctactacttccacattgaatgatctttttcgaggtttatgtctcagaggccagatttataaagcaattatgttttataattacaccatac |
12533232 |
T |
|
| Q |
204 |
taaagggttttcagttgaacc |
224 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12533231 |
taaagggttttcagttgaacc |
12533211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 89 - 220
Target Start/End: Complemental strand, 12535850 - 12535719
Alignment:
| Q |
89 |
aatataattaaagccggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgtttt |
188 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
12535850 |
aatatcattaaagccggtcatcgtcctactgcttccactttgaattatcttttacaaggtttatgtgatagaggccagatttctaaagcaattatgtttt |
12535751 |
T |
|
| Q |
189 |
ataagtacaccatactaaagggttttcagttg |
220 |
Q |
| |
|
||| ||| |||| ||||||||||| ||||| |
|
|
| T |
12535750 |
ttaattactccatcttaaagggttttgagttg |
12535719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 676928 - 677046
Alignment:
| Q |
102 |
ccggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttataagtacaccat |
201 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||| |||| |||||||| | ||| ||| ||| ||| |||| ||||||| | |||| ||| |
|
|
| T |
676928 |
ccggtcatcgtcctactacttccactttgaatcatcttttaaaaggtttatgtcaaataggagagagttacaaaccaatggtgttttaccattacatcat |
677027 |
T |
|
| Q |
202 |
actaaagggttttcagttg |
220 |
Q |
| |
|
||| |||||||||| |||| |
|
|
| T |
677028 |
actcaagggttttcggttg |
677046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 671327 - 671224
Alignment:
| Q |
123 |
ccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttataagtacaccatactaaagggttttcagttgaa |
222 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| | ||| ||| ||||||||||| ||||||| | |||| |||||| ||||||||||||||| | |
|
|
| T |
671327 |
ccactttgaatgatcttttaaaaggtttaagtcaaataggagagagttataaagcaacgttgttttaccattacatcatactcaagggttttcagttgga |
671228 |
T |
|
| Q |
223 |
cctt |
226 |
Q |
| |
|
|||| |
|
|
| T |
671227 |
cctt |
671224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University