View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_46 (Length: 328)
Name: NF1249_low_46
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 278105 - 278342
Alignment:
| Q |
10 |
aagaatatatgtataatcctatgtttgggacatttcttattgcatgcttagcattgttgtacacttgttcatcagcaacaactgttgaatatgattcaag |
109 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
278105 |
aagaaaatatgtctaatgctatgtttgggacatttcttattgcatgcttagcattgttgtacacttgttcatcagcaacaactgttgaatatgattcaag |
278204 |
T |
|
| Q |
110 |
tgcaattattattaatggagaacgaaaactaataatttctggtgcaattcactacccacgcagcacttcacaaatgtggccagatcttataatgaaagca |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
278205 |
tgcaattattcttaatggagaacgaaaactaataatttctggtgcaattcactacccacgcagcacttcacaaatgtggccagatcttataatgaaagca |
278304 |
T |
|
| Q |
210 |
aaagatggtgatcttgatgccattgaaacctatatatt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
278305 |
aaagatggtgatcttgatgccattgaaacctatatatt |
278342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University