View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_5 (Length: 550)
Name: NF1249_low_5
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 101 - 511
Target Start/End: Complemental strand, 36767135 - 36766725
Alignment:
| Q |
101 |
aaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36767135 |
aaaattgtcatgccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccagaa |
36767036 |
T |
|
| Q |
201 |
gaactaggcagattccttctagaatattgcacaggaggcgcagttgatgaactcgaaatctccggtcgattacgcttgaagggtgtggcctggaaattat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
36767035 |
gaactaggcagattccttctagaatattgcacaggaggtgcagttgatgaactcgaaatctctggtcgattacgcttgaagggtgtggcctggaaatgat |
36766936 |
T |
|
| Q |
301 |
cggttggagtttcctgtggagagttccttataggatcatccattctcctattttttccatgatacacacgtaactctttccgagacatctttcacaaaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36766935 |
tggttggagtttcctgtggagagttccttataggatcatccattctcctattttttccgtgatacacatgtaactctttccgagacatctttcacaaaca |
36766836 |
T |
|
| Q |
401 |
ccgtggttgtttcttcctgaaaaaacaaattgaaagccaagttagaagtaaaaagcaaaagacatcgatgtccattgtcgaacacatagattctaaccat |
500 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
36766835 |
ccgtggttatttcttcctgaaaaaacaaattgaaagccaagttagaagtaaaaagcaaaagacatcgatgtccattgtccaacacataaattctaaccat |
36766736 |
T |
|
| Q |
501 |
ttccatgatac |
511 |
Q |
| |
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||||||||||| |
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| T |
36766735 |
ttccatgatac |
36766725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 132 - 511
Target Start/End: Complemental strand, 36748662 - 36748286
Alignment:
| Q |
132 |
tcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccagaagaactaggcagattccttctagaatattgca |
231 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |
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| T |
36748662 |
tcatcacctctcccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccaaaagaactagacagactccttctagaatattgca |
36748563 |
T |
|
| Q |
232 |
caggaggcgcagttgatgaactcgaaatctccggtcgattacgcttgaagggtgtggcctggaaattatcggttggagtttcctgtggagagttccttat |
331 |
Q |
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||||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||| |
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| T |
36748562 |
aaggaggcgcagttgatgtacttgaaatctccggtcgatgacgcttgaggggtgtggcctgaaaataattggttggagtttcctgtggagagttccttat |
36748463 |
T |
|
| Q |
332 |
aggatcatccattctcctattttttccatgatacacacgtaactctttccgagacatctttcacaaacaccgtggttgtttcttcctgaaaaaacaaatt |
431 |
Q |
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||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||| | |||||| ||| |||||||||||||||| |
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| T |
36748462 |
aggatcatccattctcctattttttccgtgatacacatggagctctttccgagacatctttcacaaata--atggttg-ttcgccctgaaaaaacaaatt |
36748366 |
T |
|
| Q |
432 |
gaaagccaagttagaagtaaaaagcaaaagacatcgatgtccattgtcgaacacatagattctaaccatttccatgatac |
511 |
Q |
| |
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| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||| |
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| T |
36748365 |
gtaagccaagttagaagtacaaagcaaaagacattaatgtccattgtccaacacataaattccaaccatttccatgatac |
36748286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 36771489 - 36771414
Alignment:
| Q |
389 |
ctttcacaaacaccgtggttgtttcttcctgaaaaaacaaattgaaagccaagttagaagtaaaaagcaaaagacat |
465 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||| |||||||||||||| |
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| T |
36771489 |
ctttcacaaacaccgtggttgtt-cttcctgaaaacacaaattgaaaggcaaggtagaagtacaaagcaaaagacat |
36771414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 36756038 - 36755965
Alignment:
| Q |
113 |
ccagattaacgatgcatcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgc |
186 |
Q |
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||||||||| | |||||| ||||||| || |||| ||||||||||||| ||||||||||||||||||| |||| |
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| T |
36756038 |
ccagattaatggggcatcaccatcaccgctaccaccgatctcagtaaaatatgatgtccacatatcatcgatgc |
36755965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 21138038 - 21138000
Alignment:
| Q |
292 |
ggaaattatcggttggagtttcctgtggagagttcctta |
330 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||| |
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| T |
21138038 |
ggaaattattggttggagcttcctgtggagagttcctta |
21138000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 36771707 - 36771625
Alignment:
| Q |
127 |
catcatcatcaccactgccactgatctcagtaaaaaatgatgtccacatatcatccatgcccacacctccagaagaactaggc |
209 |
Q |
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|||||||||||||||| ||| | ||||| ||||||| |||||||||||| |||| || | |||||| ||||||||||||| |
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| T |
36771707 |
catcatcatcaccactaccatttatctcggtaaaaagtgatgtccacatttcatacacatctacacctttagaagaactaggc |
36771625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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