View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_51 (Length: 326)

Name: NF1249_low_51
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_51
NF1249_low_51
[»] chr3 (3 HSPs)
chr3 (117-326)||(26452896-26453105)
chr3 (92-174)||(26452805-26452887)
chr3 (96-169)||(32609383-32609456)
[»] chr4 (13 HSPs)
chr4 (197-323)||(23676342-23676469)
chr4 (93-195)||(21538912-21539014)
chr4 (96-195)||(4873037-4873136)
chr4 (112-179)||(5979786-5979853)
chr4 (103-179)||(3703584-3703660)
chr4 (96-179)||(25812263-25812339)
chr4 (138-180)||(12329026-12329068)
chr4 (139-185)||(21538844-21538890)
chr4 (153-190)||(2605367-2605404)
chr4 (115-160)||(48292387-48292432)
chr4 (139-180)||(53860895-53860936)
chr4 (99-127)||(24680790-24680818)
chr4 (88-136)||(32430543-32430591)
[»] scaffold0110 (2 HSPs)
scaffold0110 (96-195)||(11425-11524)
scaffold0110 (96-195)||(19162-19261)
[»] chr8 (5 HSPs)
chr8 (96-195)||(25939281-25939380)
chr8 (88-127)||(34676985-34677024)
chr8 (138-186)||(9040955-9041003)
chr8 (88-128)||(28798979-28799019)
chr8 (95-195)||(33432049-33432151)
[»] chr5 (17 HSPs)
chr5 (88-195)||(14613533-14613640)
chr5 (95-179)||(6706273-6706357)
chr5 (138-190)||(10818875-10818927)
chr5 (136-195)||(10818787-10818845)
chr5 (96-195)||(35924645-35924743)
chr5 (131-176)||(4639521-4639566)
chr5 (91-127)||(14123047-14123083)
chr5 (88-151)||(5506879-5506942)
chr5 (112-195)||(28976687-28976770)
chr5 (93-127)||(30511846-30511880)
chr5 (93-127)||(30552186-30552220)
chr5 (139-192)||(4192001-4192054)
chr5 (96-133)||(30513855-30513892)
chr5 (96-133)||(30554195-30554232)
chr5 (138-190)||(8367019-8367071)
chr5 (91-127)||(12075931-12075967)
chr5 (139-179)||(35924595-35924635)
[»] chr7 (7 HSPs)
chr7 (94-174)||(27866672-27866752)
chr7 (96-179)||(48073016-48073099)
chr7 (83-127)||(5617900-5617944)
chr7 (95-127)||(21311760-21311792)
chr7 (146-190)||(36390712-36390756)
chr7 (117-169)||(27747373-27747425)
chr7 (142-174)||(39933632-39933664)
[»] chr1 (8 HSPs)
chr1 (88-195)||(30018564-30018670)
chr1 (96-196)||(49632894-49632995)
chr1 (139-173)||(11985458-11985492)
chr1 (92-195)||(39065299-39065401)
chr1 (138-190)||(30018687-30018740)
chr1 (96-179)||(8258910-8258991)
chr1 (115-195)||(36724171-36724251)
chr1 (91-127)||(42486436-42486472)
[»] chr6 (11 HSPs)
chr6 (96-173)||(30351451-30351528)
chr6 (101-195)||(3806174-3806267)
chr6 (139-186)||(13613749-13613796)
chr6 (112-179)||(16396652-16396719)
chr6 (96-135)||(26221247-26221286)
chr6 (96-160)||(18142429-18142493)
chr6 (96-142)||(12120174-12120220)
chr6 (94-136)||(16185328-16185370)
chr6 (88-128)||(13613814-13613854)
chr6 (96-160)||(22997001-22997065)
chr6 (96-160)||(23791336-23791400)
[»] chr2 (6 HSPs)
chr2 (96-192)||(37629609-37629704)
chr2 (108-190)||(13793669-13793751)
chr2 (138-186)||(37096596-37096644)
chr2 (104-174)||(39994519-39994590)
chr2 (88-128)||(4984009-4984049)
chr2 (96-136)||(13798841-13798881)
[»] scaffold0197 (1 HSPs)
scaffold0197 (95-127)||(26024-26056)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 117 - 326
Target Start/End: Original strand, 26452896 - 26453105
Alignment:
Q  117 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctcgctttatttttgtcctactgg 216  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||    
T  26452896 gtagttaactattgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctcgctttatttttgtcctactgg 26452995  T
Q  217 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26452996 gctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccccgtgaattgttaaaatttcacatggggtgagaaaaacaagcattg 26453095  T
Q  317 aatcctataa 326  Q
    ||||||||||    
T  26453096 aatcctataa 26453105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 26452887 - 26452805
Alignment:
Q  92 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452887 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 26452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 32609456 - 32609383
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 169  Q
    ||||||||||||||| |||||||| |||| |||  |||  ||||||||| | |||| |||||||||||||||||    
T  32609456 ttttctagttataagtcagcggtaattaattatcactgaagtgtttttgattatttccatgtgtttctagaaaa 32609383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 197 - 323
Target Start/End: Complemental strand, 23676469 - 23676342
Alignment:
Q  197 ctttatttttgtcctactgggctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattg-ttaaaatttcacatg 295  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||||||||||||||    
T  23676469 ctttatttttgtcctactgggatttctgtgctggtgtctcccatcactgacttgacggtaaatgctcacggaccccttgaattgcttaaaatttcacatg 23676370  T
Q  296 gggtgagaaaaacaagcattgaatccta 323  Q
    | ||||||||||||||||||||||||||    
T  23676369 gagtgagaaaaacaagcattgaatccta 23676342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 21538912 - 21539014
Alignment:
Q  93 cgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 192  Q
    |||||||||| |||||||||||||||| |||||||    |||||||||||||||||||| | ||||||||||| ||||| |||| ||  |||||||||||    
T  21538912 cgattttctaattataagccagcggtaattaactaccattggggtgtttttggtcatttccttgtgtttctaggaaacattgaaagtttaaaaagcaatt 21539011  T
Q  193 ctc 195  Q
    |||    
T  21539012 ctc 21539014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 4873136 - 4873037
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    ||||||||||||||| ||||||||||||||||  ||||  ||||||||| |||||| ||||||||| ||||||| |||| | ||| |||||| |||||||    
T  4873136 ttttctagttataagtcagcggtagttaactaccgctgaagtgtttttgatcatttccatgtgtttttagaaaataatggaagtcaaaaaagaaattctc 4873037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 5979786 - 5979853
Alignment:
Q  112 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    ||||||||||||||||  | |||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  5979786 cagcggtagttaactaccgttggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 3703660 - 3703584
Alignment:
Q  103 gttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    |||||||| || |||||||||||||  ||||  |  |||||||||||||||||||||||||| ||||||||| ||||    
T  3703660 gttataagtcaacggtagttaactaccgctgatgattttttggtcattttcatgtgtttctaaaaaacaatggatgt 3703584  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 25812339 - 25812263
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    |||||||||||||| |||||||||||||||||         |||||||| |||||| |||||||||||||||||||||| ||||    
T  25812339 ttttctagttataaaccagcggtagttaactaca-------tgtttttgatcatttccatgtgtttctagaaaacaatggatgt 25812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 12329026 - 12329068
Alignment:
Q  138 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtc 180  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  12329026 gtttttgatcattttcatgtgtttctaaaaaacaatggatgtc 12329068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 21538890 - 21538844
Alignment:
Q  139 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaa 185  Q
    |||||||| |||| |||||||||||||||||||||| ||||| ||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgtcaaaaa 21538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 2605404 - 2605367
Alignment:
Q  153 catgtgtttctagaaaacaatgaatgtccaaaaagcaa 190  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2605404 catgtgtttctaggaaacaatgaatgtcaaaaaagcaa 2605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 48292387 - 48292432
Alignment:
Q  115 cggtagttaactattgctggggtgtttttggtcattttcatgtgtt 160  Q
    |||||||||||||  ||||| |||||||||||||||| ||||||||    
T  48292387 cggtagttaactaccgctggagtgtttttggtcatttacatgtgtt 48292432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 53860895 - 53860936
Alignment:
Q  139 tttttggtcattttcatgtgtttctagaaaacaatgaatgtc 180  Q
    ||||||||||||| ||||||||||||| |||||||| |||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgtc 53860936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 24680818 - 24680790
Alignment:
Q  99 tctagttataagccagcggtagttaacta 127  Q
    |||||||||||||||||||||||||||||    
T  24680818 tctagttataagccagcggtagttaacta 24680790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 32430591 - 32430543
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaactattgctgggg 136  Q
    ||||||||||||||||||||||| | | ||||||||||||  |||||||    
T  32430591 accgccgattttctagttataagtctgtggtagttaactaccgctgggg 32430543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 11524 - 11425
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    ||||||||||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  11524 ttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 19261 - 19162
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    ||||||||||||||| | || |||||||||||  |||||  ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  19261 ttttctagttataagtcggcagtagttaactacagctggaatgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 19162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 25939380 - 25939281
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    |||| |||||||||||||||||||||||||||  ||| | |||||||||||| ||| ||| ||||||||| ||||||||||| | |||||| ||||||||    
T  25939380 ttttatagttataagccagcggtagttaactaccgcttgtgtgtttttggtcttttccatatgtttctaggaaacaatgaatattcaaaaaacaattctc 25939281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 34677024 - 34676985
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaacta 127  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  34677024 accgccgattttctagttataagccaacggtagttaacta 34676985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 9040955 - 9041003
Alignment:
Q  138 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 186  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaaa 9041003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 28798979 - 28799019
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaactat 128  Q
    ||||||| ||||||||||||||| |||||||||||||||||    
T  28798979 accgccggttttctagttataagtcagcggtagttaactat 28799019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 195
Target Start/End: Complemental strand, 33432151 - 33432049
Alignment:
Q  95 attttctagttataagccagcggtagttaactattgctggggtgtttttggt---cattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaat 191  Q
    ||||||||||||||||  || || |||||| || ||||| |||||||||  |   ||||||||||| |||||||||||||||  |||| |||||| ||||    
T  33432151 attttctagttataagtaagtggcagttaattactgctgaggtgtttttttttatcattttcatgtatttctagaaaacaatagatgt-caaaaaacaat 33432053  T
Q  192 tctc 195  Q
    ||||    
T  33432052 tctc 33432049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 14613640 - 14613533
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaag 187  Q
    |||||||||||||||||||||||||||| || | ||||||  | ||| ||||||||||| |||||||||||||||||| |||||||| |||    |||||    
T  14613640 accgccgattttctagttataagccagcagtggctaactaccgttggagtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaag 14613541  T
Q  188 caattctc 195  Q
    ||||||||    
T  14613540 caattctc 14613533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 6706357 - 6706273
Alignment:
Q  95 attttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    ||||| |||||||||| || |||||||||||||  ||||   |||||||||| |||||||||||||| ||  |||||||||||||    
T  6706357 attttttagttataagtcaacggtagttaactaccgctgaaatgtttttggttattttcatgtgtttataagaaacaatgaatgt 6706273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 10818875 - 10818927
Alignment:
Q  138 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 190  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgtcaaaaaagcaa 10818927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 10818845 - 10818787
Alignment:
Q  136 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  10818845 gtgtttttggtaattttaatgtgtttctagaaaacaatg-atgttaaaaaagcaattctc 10818787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 35924645 - 35924743
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    ||||||||||||||| ||  ||||||||||||| ||| || ||| |||||| |||| ||| ||||||||| |||||||| ||||   |||||||||||||    
T  35924645 ttttctagttataagtcaatggtagttaactatcgct-ggatgtgtttggttatttccatatgtttctaggaaacaatggatgtgagaaaagcaattctc 35924743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 4639521 - 4639566
Alignment:
Q  131 ctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaa 176  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||    
T  4639521 ctggggtgtttttgatcattttcatgtgtttctaagaaacaatgaa 4639566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 14123083 - 14123047
Alignment:
Q  91 gccgattttctagttataagccagcggtagttaacta 127  Q
    |||| ||||||||||||||||||||||||||||||||    
T  14123083 gccggttttctagttataagccagcggtagttaacta 14123047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 151
Target Start/End: Complemental strand, 5506942 - 5506879
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattt 151  Q
    |||||||||||||||||||||||||||  | |||||||||  |||| | |||||||||| ||||    
T  5506942 accgccgattttctagttataagccagtcgcagttaactaccgctgagatgtttttggttattt 5506879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 28976687 - 28976770
Alignment:
Q  112 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    ||||||||||||||||| | | |  |||||||| |||||||||||| ||||||  |||||||| ||||   |||||||||||||    
T  28976687 cagcggtagttaactatcgtttgaatgtttttgatcattttcatgtatttctaagaaacaatggatgtgagaaaagcaattctc 28976770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 30511846 - 30511880
Alignment:
Q  93 cgattttctagttataagccagcggtagttaacta 127  Q
    ||||||||||||||||||||||| |||||||||||    
T  30511846 cgattttctagttataagccagcagtagttaacta 30511880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 30552186 - 30552220
Alignment:
Q  93 cgattttctagttataagccagcggtagttaacta 127  Q
    ||||||||||||||||||||||| |||||||||||    
T  30552186 cgattttctagttataagccagcagtagttaacta 30552220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 4192001 - 4192054
Alignment:
Q  139 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 192  Q
    ||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaatt 4192054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 30513892 - 30513855
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctg 133  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30513892 ttttctagttataagtcagcggtagttaactactgctg 30513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 30554232 - 30554195
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctg 133  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  30554232 ttttctagttataagtcagcggtagttaactactgctg 30554195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 8367071 - 8367019
Alignment:
Q  138 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 190  Q
    ||||||||||||||  ||| |||||||| |||||||| ||||| |||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaaagcaa 8367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 12075967 - 12075931
Alignment:
Q  91 gccgattttctagttataagccagcggtagttaacta 127  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  12075967 gccggttttctagttataagtcagcggtagttaacta 12075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 35924635 - 35924595
Alignment:
Q  139 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  35924635 tttttggtcattttcatgtttttctagaaaataatggatgt 35924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 27866672 - 27866752
Alignment:
Q  94 gattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 174  Q
    ||||||||||||||||| ||||||||||||||||| | | || |||||| |||||||||||| ||||||||| ||||||||    
T  27866672 gattttctagttataagtcagcggtagttaactatcgttcggttgttttcggtcattttcatatgtttctaggaaacaatg 27866752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 48073099 - 48073016
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    |||||||||||||||||||   ||||||||||| ||| | || ||||||||||||| ||||||||||||  |||||| ||||||    
T  48073099 ttttctagttataagccagtaatagttaactatcgctagagtatttttggtcatttccatgtgtttctaataaacaaagaatgt 48073016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 5617944 - 5617900
Alignment:
Q  83 taatgaccgccgattttctagttataagccagcggtagttaacta 127  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||    
T  5617944 taattaccgccggttttctagttataagccagcggtagttaacta 5617900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 21311792 - 21311760
Alignment:
Q  95 attttctagttataagccagcggtagttaacta 127  Q
    |||||||||||||||||||||||||||||||||    
T  21311792 attttctagttataagccagcggtagttaacta 21311760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 36390756 - 36390712
Alignment:
Q  146 tcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 190  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  36390756 tcattttcatgtgtttctagaaaacactaaatgtcaaaaaagcaa 36390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 27747425 - 27747373
Alignment:
Q  117 gtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaa 169  Q
    |||||||||||  |||| | | ||||| |||||||||||||||||||||||||    
T  27747425 gtagttaactaccgctgagttatttttagtcattttcatgtgtttctagaaaa 27747373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 39933632 - 39933664
Alignment:
Q  142 ttggtcattttcatgtgtttctagaaaacaatg 174  Q
    |||||||||||||||||||||||||||| ||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatg 39933664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 30018670 - 30018564
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaag 187  Q
    ||||||||||||||||||||||||  ||| ||||||||||  ||| | ||||||||| ||||||||||| | |||||| ||||||||  ||| |||||||    
T  30018670 accgccgattttctagttataagcacgcgatagttaactaccgcttgagtgtttttgatcattttcatgcgcttctaggaaacaatggttgt-caaaaag 30018572  T
Q  188 caattctc 195  Q
    ||||||||    
T  30018571 caattctc 30018564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 49632894 - 49632995
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtc-caaaaagcaattct 194  Q
    ||||||||||||||  ||||||||||||||||   |  || ||||||||||||||| |||||||||||||||| ||||| |||||  |||||||||||||    
T  49632894 ttttctagttataaatcagcggtagttaactaccacgaggatgtttttggtcatttccatgtgtttctagaaatcaatggatgtcaaaaaaagcaattct 49632993  T
Q  195 cg 196  Q
    ||    
T  49632994 cg 49632995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 173
Target Start/End: Complemental strand, 11985492 - 11985458
Alignment:
Q  139 tttttggtcattttcatgtgtttctagaaaacaat 173  Q
    |||||||||||||||||||||||||||||||||||    
T  11985492 tttttggtcattttcatgtgtttctagaaaacaat 11985458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 195
Target Start/End: Complemental strand, 39065401 - 39065299
Alignment:
Q  92 ccgattttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaat 191  Q
    |||||||| |||||||||| ||||| |||||||||||  |||  ||||||||  |||||| ||| |||||||||  ||||||| ||||| | |||| |||    
T  39065401 ccgattttttagttataagtcagcg-tagttaactatcactgaagtgttttttatcatttccatatgtttctagggaacaatggatgtcaacaaagtaat 39065303  T
Q  192 tctc 195  Q
    ||||    
T  39065302 tctc 39065299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 30018687 - 30018740
Alignment:
Q  138 gtttttggtcattttcatgtg-tttctagaaaacaatgaatgtccaaaaagcaa 190  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaaaagcaa 30018740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 8258991 - 8258910
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    |||||||||||||||||| |  ||||||||||  |||| |   ||||| ||||||||||||||||| ||| |||||||| ||||    
T  8258991 ttttctagttataagccaacaatagttaactaccgctgag--ttttttagtcattttcatgtgtttttaggaaacaatggatgt 8258910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 36724251 - 36724171
Alignment:
Q  115 cggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    |||||||||||||   ||||| ||||||||||||||| |||  | |||||||||||||  |||||  |||||| |||||||    
T  36724251 cggtagttaactaccactgggatgtttttggtcatttccatacgcttctagaaaacaacaaatgtaaaaaaaggaattctc 36724171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 42486472 - 42486436
Alignment:
Q  91 gccgattttctagttataagccagcggtagttaacta 127  Q
    |||| |||||||||||||||||||| |||||||||||    
T  42486472 gccggttttctagttataagccagcagtagttaacta 42486436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 30351528 - 30351451
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaat 173  Q
    |||||||||||||||  ||  |||||||||||  | |||||||||||||||||||||||| ||||||||| |||||||    
T  30351528 ttttctagttataagttagaagtagttaactaccgttggggtgtttttggtcattttcatatgtttctaggaaacaat 30351451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 3806267 - 3806174
Alignment:
Q  101 tagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 195  Q
    |||||||||| |||| |||||| | ||||| |||| ||||||||||| |||| ||||||||||||||||| ||| ||||   |||||||||||||    
T  3806267 tagttataagtcagctgtagttgattattgttgggatgtttttggtc-tttttatgtgtttctagaaaacgatggatgtgacaaaagcaattctc 3806174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 13613796 - 13613749
Alignment:
Q  139 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 186  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13613796 tttttggtcattttcatgtgtttctagaaaacaatagatgtcgaaaaa 13613749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 16396652 - 16396719
Alignment:
Q  112 cagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 179  Q
    ||||||||||||||||  | |||||||||||| |||||||||| || |||||| ||||||||| ||||    
T  16396652 cagcggtagttaactaccgttggggtgtttttagtcattttcacgtatttctaaaaaacaatggatgt 16396719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 26221286 - 26221247
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggg 135  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  26221286 ttttctagttataagccagcggttgttaactattgctggg 26221247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 18142429 - 18142493
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 160  Q
    ||||||||| |||| | |||| ||||||||||  |||| ||||||||| ||||||||||||||||    
T  18142429 ttttctagtcataaacaagcgctagttaactaccgctgaggtgtttttagtcattttcatgtgtt 18142493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 12120174 - 12120220
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttt 142  Q
    |||||||||||||||| |||||||||||||||  |||||||| ||||    
T  12120174 ttttctagttataagctagcggtagttaactaccgctggggtatttt 12120220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 16185328 - 16185370
Alignment:
Q  94 gattttctagttataagccagcggtagttaactattgctgggg 136  Q
    |||||||||||||||||||| |||||||||||||  |||||||    
T  16185328 gattttctagttataagccaacggtagttaactaccgctgggg 16185370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 13613814 - 13613854
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaactat 128  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  13613814 accgtcgattttctagttagaagccagtggtagttaactat 13613854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 22997001 - 22997065
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 160  Q
    |||||||||||||| | ||  |||||||||||  ||||  || ||||||||||||||||||||||    
T  22997001 ttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgtt 22997065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 23791400 - 23791336
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtt 160  Q
    |||||||||||||| | ||  |||||||||||  ||||  || ||||||||||||||||||||||    
T  23791400 ttttctagttataaacaagttgtagttaactaccgctgaagtatttttggtcattttcatgtgtt 23791336  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 37629609 - 37629704
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 192  Q
    ||||||||||||||| ||||||||||||||||| | | |  ||||||||||||||| ||||||||| ||  || |||| |||||  |||||||||||    
T  37629609 ttttctagttataagtcagcggtagttaactatcgat-gaatgtttttggtcatttccatgtgtttttaagaagcaataaatgtgaaaaaagcaatt 37629704  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Complemental strand, 13793751 - 13793669
Alignment:
Q  108 aagccagcggtagttaactattgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 190  Q
    |||||| | |||||||||||  | ||||||||||||||||||| |||| ||||||||  |||||||| ||||| ||| |||||    
T  13793751 aagccaaccgtagttaactaccgttggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacagcaa 13793669  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 37096644 - 37096596
Alignment:
Q  138 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 186  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  37096644 gtttttgatcatttccatgtgtttctagaaaacaatgaaggtcaaaaaa 37096596  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 39994519 - 39994590
Alignment:
Q  104 ttataagccagcggtagttaactattgctggggtgtttttgg-tcattttcatgtgtttctagaaaacaatg 174  Q
    ||||||| || |||||||||||| ||| |||  | ||||||| |||||| ||||||||||||||||||||||    
T  39994519 ttataagtcaacggtagttaactgttgttggaatttttttgggtcatttccatgtgtttctagaaaacaatg 39994590  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 4984009 - 4984049
Alignment:
Q  88 accgccgattttctagttataagccagcggtagttaactat 128  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  4984009 accgtcgattttctagttataagttagcggtagttaactat 4984049  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 13798881 - 13798841
Alignment:
Q  96 ttttctagttataagccagcggtagttaactattgctgggg 136  Q
    ||||| ||||||||| |||||||||||||||| ||||||||    
T  13798881 ttttcgagttataagtcagcggtagttaactactgctgggg 13798841  T

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Target: scaffold0197 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 26056 - 26024
Alignment:
Q  95 attttctagttataagccagcggtagttaacta 127  Q
    |||||||||||||||| ||||||||||||||||    
T  26056 attttctagttataagtcagcggtagttaacta 26024  T

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