View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_56 (Length: 323)

Name: NF1249_low_56
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_56
NF1249_low_56
[»] chr1 (8 HSPs)
chr1 (81-295)||(9157844-9158058)
chr1 (87-280)||(9220300-9220493)
chr1 (86-295)||(9163964-9164173)
chr1 (81-293)||(9175801-9176013)
chr1 (81-293)||(9202830-9203042)
chr1 (101-295)||(9114404-9114598)
chr1 (203-274)||(1840314-1840385)
chr1 (202-272)||(1866249-1866319)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 81 - 295
Target Start/End: Original strand, 9157844 - 9158058
Alignment:
Q  81 atcataggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaat 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9157844 atcataggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaat 9157943  T
Q  181 ccgtggaattaggaaaatcagaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttc 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9157944 ccgtggaattaggaaaatcagaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttc 9158043  T
Q  281 tattctgtttcgatt 295  Q
    |||||||||||||||    
T  9158044 tattctgtttcgatt 9158058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 87 - 280
Target Start/End: Original strand, 9220300 - 9220493
Alignment:
Q  87 ggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtgg 186  Q
    |||||| ||| |||||||||||||||||||||||||| || |||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||    
T  9220300 ggaagcatcttataaggaaaattatccaaatgagaaacagtaaaattataggatccatctttaacaacaaatgaataactacaccccaaagaatccgtgg 9220399  T
Q  187 aattaggaaaatcagaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttc 280  Q
    ||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9220400 aattaggaaaatcagaaacttgtacacttatattcctcatcatatgtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttc 9220493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 86 - 295
Target Start/End: Original strand, 9163964 - 9164173
Alignment:
Q  86 aggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtg 185  Q
    ||||||| ||| ||| |||||  |||||||||||  || ||  ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  9163964 aggaagcatcttatagggaaatatatccaaatgatcaacagtgaaattataaaatccatctttaacaacaaatgaataactacaccctaaagaatccgtg 9164063  T
Q  186 gaattaggaaaatcagaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttctattc 285  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  9164064 gaattaggaaaatcaaaagcttgtacacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccattttcgattc 9164163  T
Q  286 tgtttcgatt 295  Q
      ||||||||    
T  9164164 gatttcgatt 9164173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 81 - 293
Target Start/End: Original strand, 9175801 - 9176013
Alignment:
Q  81 atcataggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaat 180  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||  ||||||||||| |||| |||||||||||| ||||  ||||| |||||||| |    
T  9175801 atcataggaagcctctcataaggaaaattgtccaaatcagaaacagtgaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagatt 9175900  T
Q  181 ccgtggaattaggaaaatcagaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttc 280  Q
    |  |  |||   || ||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9175901 cgtttaaatcgagataattagaagcttgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttc 9176000  T
Q  281 tattctgtttcga 293  Q
     ||||||||||||    
T  9176001 aattctgtttcga 9176013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 81 - 293
Target Start/End: Original strand, 9202830 - 9203042
Alignment:
Q  81 atcataggaagcctctcataaggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaat 180  Q
    |||| ||||||| ||||| |||||||||| ||||||| ||||| ||| ||||||||||| |||| |||||||||||| ||||  ||||| |||||||| |    
T  9202830 atcaaaggaagcttctcagaaggaaaattgtccaaatcagaaacagagaaattataaaatccatttttaacaacaaacgaattgctacatcccaaagatt 9202929  T
Q  181 ccgtggaattaggaaaatcagaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttc 280  Q
    |  |  |||   || ||| ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9202930 cgtttaaatcgagataattagaagattgtatagttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgctccgttttc 9203029  T
Q  281 tattctgtttcga 293  Q
     ||||||||||||    
T  9203030 gattctgtttcga 9203042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 101 - 295
Target Start/End: Complemental strand, 9114598 - 9114404
Alignment:
Q  101 aggaaaattatccaaatgagaaatagaaaaattataaaacccatctttaacaacaaatgaataactacaccccaaagaatccgtggaattaggaaaatca 200  Q
    |||||| || ||||||||||||| |||||||||||||   |||| |||||||||||| ||||| ||||| | |||||| ||  ||||||||  |||| ||    
T  9114598 aggaaatttgtccaaatgagaaacagaaaaattataagctccatttttaacaacaaaagaatatctacatctcaaagattcattggaattaaaaaaagca 9114499  T
Q  201 gaagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttccgttttctattctgtttcgatt 295  Q
     ||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| ||||||||    
T  9114498 aaagcttctatagttatattcctcatcttaggtggaatatcaacttcacaacaaccaataccagaacatgttccattttcaattctctttcgatt 9114404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 1840385 - 1840314
Alignment:
Q  203 agcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgttcc 274  Q
    ||||| |||||||||||  |||||  |||| |||||||||||||| ||||| || |||||||||||||||||    
T  1840385 agcttgtatacttatatatctcattctaggaggaatatcaacttggcaacaccctatacccgaacatgttcc 1840314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 1866319 - 1866249
Alignment:
Q  202 aagcttctatacttatattcctcatcataggtggaatatcaacttgacaacaaccaatacccgaacatgtt 272  Q
    |||||||||| |||||||||| |||  |||| |||||||||||||| || || || |||||||||||||||    
T  1866319 aagcttctatgcttatattccacattttaggaggaatatcaacttggcagcaccctatacccgaacatgtt 1866249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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