View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_57 (Length: 322)

Name: NF1249_low_57
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_57
NF1249_low_57
[»] chr2 (1 HSPs)
chr2 (7-127)||(3261597-3261712)
[»] chr7 (4 HSPs)
chr7 (169-216)||(46691848-46691895)
chr7 (165-212)||(42598072-42598119)
chr7 (166-212)||(1039063-1039109)
chr7 (166-212)||(30655598-30655644)
[»] chr4 (2 HSPs)
chr4 (171-212)||(16662312-16662353)
chr4 (170-212)||(16572156-16572198)
[»] chr8 (5 HSPs)
chr8 (169-217)||(5200485-5200533)
chr8 (169-212)||(24200625-24200668)
chr8 (169-212)||(30836131-30836174)
chr8 (170-212)||(40930834-40930876)
chr8 (169-217)||(22839335-22839383)
[»] chr1 (5 HSPs)
chr1 (172-212)||(43460791-43460831)
chr1 (169-212)||(12173040-12173083)
chr1 (169-212)||(28447805-28447848)
chr1 (170-216)||(31833973-31834019)
chr1 (174-212)||(42442015-42442053)
[»] chr3 (2 HSPs)
chr3 (169-212)||(52076151-52076194)
chr3 (171-212)||(28934741-28934782)
[»] chr5 (2 HSPs)
chr5 (174-216)||(9931804-9931846)
chr5 (172-212)||(22887297-22887337)
[»] chr6 (1 HSPs)
chr6 (169-217)||(6575806-6575854)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 3261597 - 3261712
Alignment:
Q  7 aaagaaacctatagcgctcctttttcatcacaacataacatgcttcacgagtaaaaataaattttaaaatggttaaggcaagttctagatagtcaaagtc 106  Q
    |||||| ||||||| |||| |||||||||||||||     ||||||| |||||||||| |  || |||||||||| ||||||||||||| ||||||||||    
T  3261597 aaagaatcctatagtgctcatttttcatcacaaca-----tgcttcaagagtaaaaattagcttcaaaatggttagggcaagttctagagagtcaaagtc 3261691  T
Q  107 aatgatgatttatcgctcaaa 127  Q
    |||||||||||||| ||||||    
T  3261692 aatgatgatttatcactcaaa 3261712  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 46691848 - 46691895
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaacaag 216  Q
    ||||||||||||||||||||||||| || ||| |||||||||||||||    
T  46691848 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaag 46691895  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 42598119 - 42598072
Alignment:
Q  165 aaaacggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||||||||||||||  || ||| |||||||||||    
T  42598119 aaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaa 42598072  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 1039063 - 1039109
Alignment:
Q  166 aaacggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    |||||||||||||||||||||| ||||| || ||| |||||||||||    
T  1039063 aaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaa 1039109  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 30655598 - 30655644
Alignment:
Q  166 aaacggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    |||||||||||||||||||||||||||| || ||| ||| |||||||    
T  30655598 aaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaa 30655644  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 16662312 - 16662353
Alignment:
Q  171 gcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  16662312 gcaaaatattattaaccaacaagcccgtgcgagaagcactaa 16662353  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 16572198 - 16572156
Alignment:
Q  170 ggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    |||||||||||||||||||||||| || ||||||| |||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaa 16572156  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 5200485 - 5200533
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaacaagt 217  Q
    |||||||||||||||||||||||||||| ||| |||| |||||| ||||    
T  5200485 cggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagt 5200533  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 24200625 - 24200668
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||    
T  24200625 cggcaaaatattattaatcaacaagtccgtgcaagaagcactaa 24200668  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 30836131 - 30836174
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    |||||||||||||||||||||||||  | |||||||||||||||    
T  30836131 cggcaaaatattattaaccaacaagctcgtgcgagaagcactaa 30836174  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 40930834 - 40930876
Alignment:
Q  170 ggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    |||||||||||||||||||||||| || ||| |||||||||||    
T  40930834 ggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 40930876  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 22839383 - 22839335
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaacaagt 217  Q
    ||||||||||||||||||||||||| || ||| ||| ||||||| ||||    
T  22839383 cggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagt 22839335  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 43460831 - 43460791
Alignment:
Q  172 caaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  43460831 caaaatattattaaccaacaagtctgtgcgagaagcactaa 43460791  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 12173083 - 12173040
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||||||||||| || ||| |||||||||||    
T  12173083 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 12173040  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 28447848 - 28447805
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||||||||||| || ||| |||||||||||    
T  28447848 cggcaaaatattattaaccaacaagcccgtgcaagaagcactaa 28447805  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 31834019 - 31833973
Alignment:
Q  170 ggcaaaatattattaaccaacaagtccatgcgagaagcactaacaag 216  Q
    ||||||||||||||||||||||| ||| ||| ||| |||||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaag 31833973  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 42442015 - 42442053
Alignment:
Q  174 aaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  42442015 aaatattattaaccaacaagtccgtgcaagaagcactaa 42442053  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 52076194 - 52076151
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||| ||||||||||| || |||||||||||||||    
T  52076194 cggcaaaatattactaaccaacaagcccgtgcgagaagcactaa 52076151  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 28934741 - 28934782
Alignment:
Q  171 gcaaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    ||||||||||||||||||||||| || ||| |||||||||||    
T  28934741 gcaaaatattattaaccaacaagcccgtgcaagaagcactaa 28934782  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 9931804 - 9931846
Alignment:
Q  174 aaatattattaaccaacaagtccatgcgagaagcactaacaag 216  Q
    |||||||||||||||||||| || ||| |||||||||||||||    
T  9931804 aaatattattaaccaacaagcccgtgcaagaagcactaacaag 9931846  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 22887337 - 22887297
Alignment:
Q  172 caaaatattattaaccaacaagtccatgcgagaagcactaa 212  Q
    |||||||||||||||||||||| || ||||||| |||||||    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaa 22887297  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 6575854 - 6575806
Alignment:
Q  169 cggcaaaatattattaaccaacaagtccatgcgagaagcactaacaagt 217  Q
    ||||||||||||||||| ||||||| || ||| ||||||||||| ||||    
T  6575854 cggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagt 6575806  T

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