View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_61 (Length: 321)

Name: NF1249_low_61
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_61
NF1249_low_61
[»] chr3 (7 HSPs)
chr3 (227-321)||(45168621-45168716)
chr3 (87-136)||(45168481-45168530)
chr3 (83-132)||(43304142-43304191)
chr3 (83-131)||(3069059-3069107)
chr3 (83-125)||(43306856-43306898)
chr3 (83-132)||(3063921-3063970)
chr3 (99-132)||(53012882-53012915)
[»] chr8 (5 HSPs)
chr8 (83-132)||(22926831-22926880)
chr8 (83-132)||(22922035-22922084)
chr8 (90-130)||(6845195-6845235)
chr8 (89-126)||(23570449-23570486)
chr8 (83-132)||(42890253-42890302)
[»] chr6 (5 HSPs)
chr6 (83-132)||(3535891-3535940)
chr6 (83-132)||(3542102-3542151)
chr6 (83-132)||(29340991-29341040)
chr6 (86-126)||(30052064-30052104)
chr6 (86-126)||(30049777-30049817)
[»] chr2 (6 HSPs)
chr2 (83-132)||(2155823-2155872)
chr2 (83-132)||(2165779-2165828)
chr2 (85-132)||(31633960-31634007)
chr2 (83-132)||(15129274-15129323)
chr2 (83-132)||(22011288-22011337)
chr2 (96-132)||(33655482-33655518)
[»] chr1 (2 HSPs)
chr1 (85-132)||(8931080-8931126)
chr1 (83-132)||(50857629-50857678)
[»] chr7 (6 HSPs)
chr7 (83-132)||(1220617-1220666)
chr7 (90-132)||(13882876-13882918)
chr7 (83-132)||(859340-859389)
chr7 (83-132)||(1217344-1217393)
chr7 (90-132)||(13886378-13886420)
chr7 (83-132)||(4303305-4303354)
[»] chr4 (3 HSPs)
chr4 (83-134)||(24667541-24667592)
chr4 (83-125)||(6659514-6659556)
chr4 (83-121)||(22691178-22691216)
[»] scaffold0110 (2 HSPs)
scaffold0110 (83-126)||(45447-45490)
scaffold0110 (86-126)||(46892-46932)
[»] chr5 (2 HSPs)
chr5 (90-132)||(40778978-40779020)
chr5 (83-132)||(21849155-21849204)


Alignment Details
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 227 - 321
Target Start/End: Original strand, 45168621 - 45168716
Alignment:
Q  227 atatctagaggg-taagaacatgcttttctcactttgtggggatcaaaatggggtctttttcattttgattggacccaaaagagcctttctcaaaa 321  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  45168621 atatctagaggggtaagaacatgcttttctcattttgtggggatcaaaatggggtctttttcattttgattggacccaaaacagcctttcttaaaa 45168716  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 45168481 - 45168530
Alignment:
Q  87 ctgcataacttctgcttatatagtgaaagaaataacaaactcgtggactg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45168481 ctgcataacttctgcttatatagtgaaagaaataacaaactcgtggactg 45168530  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 43304142 - 43304191
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  43304142 taggctacataagttctgcttatatagtgaaagaaataacaaacccgtgg 43304191  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 3069059 - 3069107
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtg 131  Q
    |||||| ||||| || |||||||||||||||||||||||||||||||||    
T  3069059 taggctacataagttatgcttatatagtgaaagaaataacaaactcgtg 3069107  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 43306856 - 43306898
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaa 125  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  43306856 taggctacataagttctgcttatatagtgaaagaaataacaaa 43306898  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 3063921 - 3063970
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| || |||||||||||||||||||||||||||| |||||    
T  3063921 taggctacataagttatgcttatatagtgaaagaaataacaaacccgtgg 3063970  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 53012915 - 53012882
Alignment:
Q  99 tgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||||||||||||||||||| |||||    
T  53012915 tgcttatatagtgaaagaaataacaaacccgtgg 53012882  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 22926831 - 22926880
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  22926831 taggctgcataagttctgcttatatagtgaaagaaataacaaacccgtgg 22926880  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 22922035 - 22922084
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  22922035 taggctgcataagttctgcatatatagtgaaagaaataacaaacccgtgg 22922084  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 6845235 - 6845195
Alignment:
Q  90 cataacttctgcttatatagtgaaagaaataacaaactcgt 130  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  6845235 cataagttctgcttatatagtgaaagaaataacaaactcgt 6845195  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 23570486 - 23570449
Alignment:
Q  89 gcataacttctgcttatatagtgaaagaaataacaaac 126  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  23570486 gcataagttccgcttatatagtgaaagaaataacaaac 23570449  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 42890302 - 42890253
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| || ||||||| |||||||||||||||||||| |||||    
T  42890302 taggctacataagttttgcttatgtagtgaaagaaataacaaacccgtgg 42890253  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 3535940 - 3535891
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  3535940 taggctgcataagttctgcttatatagtgaaagaaataacaaacccgtgg 3535891  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 3542151 - 3542102
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  3542151 taggctgcataagttctgcttatatagtgaaagaaataacaaacccgtgg 3542102  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 29340991 - 29341040
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| |||||||||||||||||  |||||||||||| |||||    
T  29340991 taggctgcataagttctgcttatatagtgattgaaataacaaacccgtgg 29341040  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 30052104 - 30052064
Alignment:
Q  86 gctgcataacttctgcttatatagtgaaagaaataacaaac 126  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  30052104 gctgcataagttttgcttatatagtgaaagaaataacaaac 30052064  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 30049817 - 30049777
Alignment:
Q  86 gctgcataacttctgcttatatagtgaaagaaataacaaac 126  Q
    |||| |||| || ||||||||||||||||||||||||||||    
T  30049817 gctgaataagttttgcttatatagtgaaagaaataacaaac 30049777  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 2155872 - 2155823
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  2155872 taggctgcataagttctgcttatatagtgaaagaaataacaaacacgtgg 2155823  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 2165828 - 2165779
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  2165828 taggctgcataagttctccttatatagtgaaagaaataacaaactcgtgg 2165779  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 31634007 - 31633960
Alignment:
Q  85 ggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  31634007 ggctgcataagttctacttatatagtgaaagaaataacaaactcgtgg 31633960  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 15129323 - 15129274
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  15129323 taggctacataagttctgcttatatagtgaaagaaataacaaacccgtgg 15129274  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 22011337 - 22011288
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| || ||||||||||||||||||||||||| || |||||    
T  22011337 taggctacataagttttgcttatatagtgaaagaaataacagacccgtgg 22011288  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 33655518 - 33655482
Alignment:
Q  96 ttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||| |||||||||||||||||||||||||| |||||    
T  33655518 ttctccttatatagtgaaagaaataacaaacccgtgg 33655482  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 8931126 - 8931080
Alignment:
Q  85 ggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  8931126 ggctgcataa-ttctgcttatatagtgaaagaaataacaaactcgtgg 8931080  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 50857629 - 50857678
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||||||||| |||||||||||||||||||| |||||||||| |||||    
T  50857629 taggctgcataagttctgcttatatagtgaaagtaataacaaacccgtgg 50857678  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 1220617 - 1220666
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  1220617 taggctacataagttctgtttatatagtgaaagaaataacaaactcgtgg 1220666  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 13882876 - 13882918
Alignment:
Q  90 cataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  13882876 cataagttctgcttatatagtgaaagaaataacaaacccgtgg 13882918  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 859340 - 859389
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| || || |||||||||||||||||||||||||||||||    
T  859340 taggctacataagttatgtttatatagtgaaagaaataacaaactcgtgg 859389  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 1217344 - 1217393
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| || || |||||||||||||||||||||||||||||||    
T  1217344 taggctacataagttatgtttatatagtgaaagaaataacaaactcgtgg 1217393  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 13886378 - 13886420
Alignment:
Q  90 cataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||    
T  13886378 cataagttcagcttatatagtgaaagaaataacaaacccgtgg 13886420  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 4303354 - 4303305
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| | ||| ||||||||||||||||||||||||| |||||    
T  4303354 taggctacataagtcctgtttatatagtgaaagaaataacaaacccgtgg 4303305  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 24667592 - 24667541
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtggac 134  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||| |||||||    
T  24667592 taggctacataagttctgcttatataatgaaagaaataacaaacccgtggac 24667541  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 6659514 - 6659556
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaa 125  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  6659514 taggctacataagttctgcttatatagtgaaagaaataacaaa 6659556  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 22691216 - 22691178
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataa 121  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  22691216 taggctacataagttctgcttatatagtgaaagaaataa 22691178  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 45447 - 45490
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaac 126  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||    
T  45447 taggctgcataagttctccttatatagtgaaagaaataataaac 45490  T

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Target: scaffold0110; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 46892 - 46932
Alignment:
Q  86 gctgcataacttctgcttatatagtgaaagaaataacaaac 126  Q
    |||| |||| || ||||||||||||||||||||||||||||    
T  46892 gctggataagttttgcttatatagtgaaagaaataacaaac 46932  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 40778978 - 40779020
Alignment:
Q  90 cataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    ||||| |||||||||||||||||||||||||| |||| |||||    
T  40778978 cataagttctgcttatatagtgaaagaaataataaacacgtgg 40779020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 21849155 - 21849204
Alignment:
Q  83 taggctgcataacttctgcttatatagtgaaagaaataacaaactcgtgg 132  Q
    |||||| ||||| ||  ||||||||||||||||||||||||||| |||||    
T  21849155 taggctacataagtttcgcttatatagtgaaagaaataacaaacccgtgg 21849204  T

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