View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_65 (Length: 317)
Name: NF1249_low_65
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_65 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 81 - 317
Target Start/End: Original strand, 4932819 - 4933055
Alignment:
| Q |
81 |
tatgagcaattcttcaggagatgttaacaagactaacccttcaaacatagggtacccttccttaccaaaaaaggattcttcccattcttacattctttgt |
180 |
Q |
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| T |
4932819 |
tatgagcaattcttcaggagatgttaacaagactaacccttcaaacatagggtacccttccttaccaaaaaaggattcttcccattcttacattctttgt |
4932918 |
T |
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| Q |
181 |
tttggaaatgagaatccagaatcaatgttgaacattggttcaactttaaaaccaaaaggcaaggtttctaatcatgggaaatctttaacctcaaaagggt |
280 |
Q |
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| T |
4932919 |
tttggaaatgagaatccagaatcaatgttgaacattggttcaactttaaaaccaaaaggcaaggtttctaatcatgggaaatctttagcctcaaaagggt |
4933018 |
T |
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| Q |
281 |
ccttagaaaaccaaaaaaggggaccaaaacgcaatat |
317 |
Q |
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| T |
4933019 |
ccttagaaaaccaaaaaaagggaccaaaacgcaatat |
4933055 |
T |
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