View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_69 (Length: 310)
Name: NF1249_low_69
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_69 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 35340190 - 35340042
Alignment:
| Q |
161 |
gacacatccacaatatcagcccatagtgccgatgaaatagaaaggaggggctcctacaacacaatgagactaagctattagctcctattttcgtcaatat |
260 |
Q |
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| T |
35340190 |
gacacatccacaatatcagcccatactgccgatgaaatagaaaggaggggctcctacaacacaatgagactaagctattagctcctattttcgtcaagat |
35340091 |
T |
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| Q |
261 |
atccgcacaaacatttcattcttggagagtatgatgatgaactatgaag |
309 |
Q |
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| T |
35340090 |
atccgcacaaacatttcattcttggagagtatgatgatgaactatgaag |
35340042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 13579410 - 13579359
Alignment:
| Q |
161 |
gacacatccacaatatcagcccatagtgccgatgaaatagaaaggaggggct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13579410 |
gacacatccacaatatcagcccatagtgccgatgaaatagaaaggaggggct |
13579359 |
T |
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