View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_70 (Length: 309)
Name: NF1249_low_70
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_70 |
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Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 76 - 302
Target Start/End: Complemental strand, 9873469 - 9873242
Alignment:
| Q |
76 |
ttcttttcatttattagtttttgaaaatgcgaa-atgcaacgcggtgaagtgaacaaaaattgtagcaatcggtagcgacgattcaccttttctttctca |
174 |
Q |
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| T |
9873469 |
ttcttttcatttattagtttttgaaaatgcgacgatgcaacgcggtgaagtgaacaaaaattgtagcaatcggtagcgacgattcaccttctctttctca |
9873370 |
T |
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| Q |
175 |
ccgccgcaaatagaagaggctgatgaaactccaagaaaaagaagataactgcatcaccgagaataacgaaaaagaagaagagcagctggcattgaaggat |
274 |
Q |
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| T |
9873369 |
ctgctgcaaaaggaagaggctgatgaaactccaagaagaagaagataattacatcgccgagaataatgaaaaagaagaagagcagctgccattgaagaat |
9873270 |
T |
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| Q |
275 |
gttaaacccattggcgcaacagctaggg |
302 |
Q |
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| T |
9873269 |
gttaaacccattggcgaaacagttaggg |
9873242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 120 - 291
Target Start/End: Original strand, 9867017 - 9867188
Alignment:
| Q |
120 |
tgaagtgaacaaaaattgtagcaatcggtagcgacgattcaccttttctttctcaccgccgcaaatagaagaggctgatgaaactccaagaaaaagaaga |
219 |
Q |
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| T |
9867017 |
tgaagtgaacaaaaatggtagcaataggtagcgacgattcaccttctccttcccactgccgcaaaaggaagaagctgatgaaactccaagaagaagaaga |
9867116 |
T |
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| Q |
220 |
taactgcatcaccgagaataacgaaaaagaagaagagcagctggcattgaaggatgttaaacccattggcgc |
291 |
Q |
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| T |
9867117 |
tgactacatcaccgagaataaggagaaagaagaagagcatccgccattggaggatgctaaacccattggcgc |
9867188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 9886452 - 9886350
Alignment:
| Q |
118 |
ggtgaagtgaacaaaaattgtagcaatcggtagcgacgattcaccttttctttctcaccgccgcaaata-gaagaggctgatgaaactccaagaaaaaga |
216 |
Q |
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| T |
9886452 |
ggtgaagtgaacaaaaatggtagcaatcggcagcctcgactcaccttctccttctcacctccgcaaaaaggaagaggctgatggaactccaagaagaaga |
9886353 |
T |
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| Q |
217 |
aga |
219 |
Q |
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||| |
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| T |
9886352 |
aga |
9886350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 287
Target Start/End: Original strand, 9873635 - 9873806
Alignment:
| Q |
118 |
ggtgaagtgaacaaaaattgtagcaatcggtagcgacgattcaccttttctttctcaccgccgcaaatagaagaggctgatgaaactcc---aagaaaaa |
214 |
Q |
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| T |
9873635 |
ggtgaattgaacaaaaatggtagcaatcggtagtgacgactcaccttctccttctcacc-atgaaaaaggaagaggctcatgaaactccaagaagaacaa |
9873733 |
T |
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| Q |
215 |
gaagataactgcatcaccgagaataacgaaaaagaagaagagcagctggcattgaaggatgttaaacccattg |
287 |
Q |
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| T |
9873734 |
gaagatgactacgtcgacgagaagaaggagaaataagaagaggagccgccattggaggatgctaaacccattg |
9873806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 287
Target Start/End: Original strand, 9886658 - 9886830
Alignment:
| Q |
117 |
cggtgaagtgaacaaaaattgtagcaatcggtagcgacgattcaccttttctttctcaccgccgcaaatagaagaggctgatgaaactccaagaaaaaga |
216 |
Q |
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||||||| ||||||| ||| |||||||| |||||||||| ||||||| || |||||||| ||||| ||||||||| |||||||| |||||| |||| |
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| T |
9886658 |
cggtgaattgaacaacaatggtagcaattagtagcgacgactcaccttctccttctcaccat-gcaaaccgaagaggctcatgaaacttcaagaagaaga |
9886756 |
T |
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| Q |
217 |
aga---taactgcatcaccgagaataacgaaaaagaagaagagcagctggcattgaaggatgttaaacccattg |
287 |
Q |
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| T |
9886757 |
agaagatgactacgtcgacgagaagaaggagaaagaagaagaggagccaccattggtggatgctaaacccattg |
9886830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 40956510 - 40956578
Alignment:
| Q |
152 |
gacgattcaccttttctttctcaccgccgcaaatagaagaggctgatgaaactccaagaaaaagaagat |
220 |
Q |
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| T |
40956510 |
gacgattcaccttctccttctcaccaccgcaaaaggaagaggctgatgaaactgcaagaagatgaagat |
40956578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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