View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_74 (Length: 305)

Name: NF1249_low_74
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_74
NF1249_low_74
[»] chr2 (20 HSPs)
chr2 (1-240)||(39221221-39221460)
chr2 (35-239)||(39390849-39391053)
chr2 (2-213)||(39389514-39389725)
chr2 (29-213)||(39198356-39198540)
chr2 (29-213)||(39192676-39192860)
chr2 (61-153)||(39415854-39415946)
chr2 (63-153)||(39136776-39136866)
chr2 (45-121)||(39221907-39221983)
chr2 (45-121)||(39222117-39222193)
chr2 (114-213)||(39603044-39603143)
chr2 (62-152)||(39222464-39222554)
chr2 (35-135)||(39415108-39415208)
chr2 (100-152)||(39458705-39458757)
chr2 (21-108)||(39192542-39192629)
chr2 (21-108)||(39198222-39198309)
chr2 (36-102)||(39415451-39415517)
chr2 (163-213)||(39451804-39451854)
chr2 (24-64)||(2361535-2361575)
chr2 (24-56)||(39221162-39221194)
chr2 (47-103)||(39603028-39603084)
[»] chr5 (1 HSPs)
chr5 (35-213)||(33560406-33560584)
[»] chr7 (1 HSPs)
chr7 (73-213)||(19807077-19807217)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39221460 - 39221221
Alignment:
Q  1 caagttcgttatctttcaactctaattccttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39221460 caagttcgttatctttcaactctaattccttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttg 39221361  T
Q  101 gccatcgagttgcttctctttggagtcaagttcctcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttc 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39221360 gccatcaagttgcttctctttggagtcaagttcctcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttc 39221261  T
Q  201 tttttagattccacacggccttcaagttccttctcctttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39221260 tttttagattccacacggccttcaagttccttctcctttg 39221221  T

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Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 39390849 - 39391053
Alignment:
Q  35 ttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtcaagttcc 134  Q
    |||||| |||||||||||||||||  |||||||||  | ||||| |||||| ||||| || | |||   ||| |||||||||||||| ||||||||||||    
T  39390849 ttttgactcaaactccttcacctgtttttcaaagtagtcctttttagattctagctctttaatttgatgatcaagttgcttctctttagagtcaagttcc 39390948  T
Q  135 tcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttctttttagattccacacggccttcaagttccttct 234  Q
    ||||| ||| ||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  39390949 tcaacttgttctttcaaagacctcattcttgatttgagctcctccatcatgccttcgaaatgcttctttttagattccacacggccttcaaattccttct 39391048  T
Q  235 ccttt 239  Q
    |||||    
T  39391049 ccttt 39391053  T

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Target: chr2; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 39389514 - 39389725
Alignment:
Q  2 aagttcgttatctttcaactctaattccttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttgg 101  Q
    |||||||||||||||  ||| | |||||||||| ||||| ||||||||  |||| || ||||||||||| | ||||| |||||||| |||||||||||||    
T  39389514 aagttcgttatcttttgactgtgattccttcttctttgactcaaactctatcacttgtctttcaaagtggtcctttttagattccacctccttcacttgg 39389613  T
Q  102 ccatcgagttgcttctctttggagtcaagttcctcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttct 201  Q
    ||||| |||||||||||||||||||||| ||||| ||  ||| ||||||||   ||||   |||||||||||||| ||||||||||||||||||||||||    
T  39389614 ccatcaagttgcttctctttggagtcaaattcctgaaattgtactttcaatagcctcaattttgatttgagctccaccatcatgctttcgaaatgcttct 39389713  T
Q  202 ttttagattcca 213  Q
    ||||||||||||    
T  39389714 ttttagattcca 39389725  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 39198356 - 39198540
Alignment:
Q  29 cttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtca 128  Q
    ||||| |||||| |||||||||||||| || | ||||||  | ||||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||| |    
T  39198356 cttctcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaa 39198455  T
Q  129 agttcctcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttctttttagattcca 213  Q
    | ||||| ||| |||||| ||||||  ||||   ||||||| ||||||| | |||||| | | | ||||||| ||||||||||||    
T  39198456 aattccttaacttgtcctatcaatggcctcacagttgattttagctccttcctcatgcctactatatgcttccttttagattcca 39198540  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 29 - 213
Target Start/End: Original strand, 39192676 - 39192860
Alignment:
Q  29 cttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtca 128  Q
    ||||| |||||| |||||||||||||| || | ||||||  | ||||||| ||||||||||||||||| ||||| ||| |||||||||||||| |||| |    
T  39192676 cttctcttttgactcaaactccttcacttggcattcaaatagcttctttttagattccagctccttcagttggctatcaagttgcttctctttagagtaa 39192775  T
Q  129 agttcctcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttctttttagattcca 213  Q
    | ||||| ||| |||||| ||||||  ||||   || |||| ||||||| | |||||| | | | ||||||| ||||||||||||    
T  39192776 aattccttaacttgtcctatcaatggcctcacagtttattttagctccttcctcatgcctactatatgcttccttttagattcca 39192860  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 39415854 - 39415946
Alignment:
Q  61 tttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtcaagttcctcaacctgtcctttcaatg 153  Q
    ||||||| || ||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||  ||||||||| || ||||||||||||||    
T  39415854 tttcaaactgcttctttttagattccagttcctttacttggccatcgagttgcttctctttagaagcaagttccttaaactgtcctttcaatg 39415946  T

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Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 39136866 - 39136776
Alignment:
Q  63 tcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtcaagttcctcaacctgtcctttcaatg 153  Q
    ||||| || ||||||| ||||||||||||||||||||||||||  |||||||||||||| ||| ||||||||| ||  |||||||||||||    
T  39136866 tcaaactggttctttttagattccagctccttcacttggccattcagttgcttctctttagaggcaagttccttaatttgtcctttcaatg 39136776  T

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Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 39221983 - 39221907
Alignment:
Q  45 aactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctcttt 121  Q
    ||||||||||| || ||||||||  | ||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  39221983 aactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctcttt 39221907  T

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Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 39222193 - 39222117
Alignment:
Q  45 aactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctcttt 121  Q
    ||||||||||| || ||||||||  | ||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  39222193 aactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctcttt 39222117  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 39603143 - 39603044
Alignment:
Q  114 ttctctttggagtcaagttcctcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcat-gctttcgaaatgcttctttttagattcc 212  Q
    ||||||||||| |||||||||| ||||||||||||||||   | ||   ||||| |||||||||||| ||| |||||| |||||||||||||||||||||    
T  39603143 ttctctttggattcaagttccttaacctgtcctttcaattgccacagatttgatgtgagctcctcca-catggctttcaaaatgcttctttttagattcc 39603045  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 39222554 - 39222464
Alignment:
Q  62 ttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtcaagttcctcaacctgtcctttcaat 152  Q
    |||||||| || || || |||||| | |||||||||| ||||||| | || ||||||||| || |||| ||||| ||||||||||||||||    
T  39222554 ttcaaagtcatcctctttagattcaaactccttcactcggccatcaaatttcttctctttagactcaatttccttaacctgtcctttcaat 39222464  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 39415108 - 39415208
Alignment:
Q  35 ttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtcaagttcc 134  Q
    ||||||||||| ||||||||  || ||||| || || |||||||  |||||||||||||||||| | || ||  ||||||||||||| || ||||| |||    
T  39415108 ttttgattcaagctccttcagttggctttcgaaatgcttcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagctcc 39415207  T
Q  135 t 135  Q
    |    
T  39415208 t 39415208  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 39458757 - 39458705
Alignment:
Q  100 ggccatcgagttgcttctctttggagtcaagttcctcaacctgtcctttcaat 152  Q
    ||||||| |||||||||||||| || |||||||||| ||| ||||||||||||    
T  39458757 ggccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaat 39458705  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 39192542 - 39192629
Alignment:
Q  21 tctaattccttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcga 108  Q
    ||||||| ||||| ||||||||  ||||||| ||| ||||||| ||| || ||||||  |||||| || |||||||||||||| ||||    
T  39192542 tctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttccttcacttggccttcga 39192629  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 39198222 - 39198309
Alignment:
Q  21 tctaattccttcttttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcga 108  Q
    ||||||| ||||| ||||||||  ||||||| ||| ||||||| ||| || ||||||  |||||| || |||||||||||||| ||||    
T  39198222 tctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttccttcacttggccttcga 39198309  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 39415451 - 39415517
Alignment:
Q  36 tttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggc 102  Q
    ||||| || |||||||| || || |||||||| || ||||||| ||||||||||||| |||||||||    
T  39415451 tttgactccaactcctttacttgtctttcaaattgcttctttttagattccagctccctcacttggc 39415517  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 39451854 - 39451804
Alignment:
Q  163 ttgatttgagctcctccatcatgctttcgaaatgcttctttttagattcca 213  Q
    ||||||||||||||||||    |||||| ||||||||||||||||||||||    
T  39451854 ttgatttgagctcctccacttggctttcaaaatgcttctttttagattcca 39451804  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 2361575 - 2361535
Alignment:
Q  24 aattccttcttttttgattcaaactccttcacctgactttc 64  Q
    |||| ||||||||||||||||| |||||||||||| |||||    
T  2361575 aattgcttcttttttgattcaagctccttcacctgcctttc 2361535  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 39221194 - 39221162
Alignment:
Q  24 aattccttcttttttgattcaaactccttcacc 56  Q
    |||||||||| ||||||||||||||||||||||    
T  39221194 aattccttctgttttgattcaaactccttcacc 39221162  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 39603084 - 39603028
Alignment:
Q  47 ctccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggcc 103  Q
    ||||| ||| || |||||||| || ||||||| ||||||||||||| ||||||||||    
T  39603084 ctcctccacatggctttcaaaatgcttctttttagattccagctccgtcacttggcc 39603028  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 35 - 213
Target Start/End: Complemental strand, 33560584 - 33560406
Alignment:
Q  35 ttttgattcaaactccttcacctgactttcaaagtgattcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtcaagttcc 134  Q
    |||||| ||||||||||| || || ||||||||||| ||||||| |||||||||||||||||| || ||||| |||||||||||||| || ||||||||     
T  33560584 ttttgactcaaactccttaacttgtctttcaaagtggttctttttagattccagctccttcacctgaccatcaagttgcttctctttagaatcaagttct 33560485  T
Q  135 tcaacctgtcctttcaatgaactcatgcttgatttgagctcctccatcatgctttcgaaatgcttctttttagattcca 213  Q
    | ||  ||| ||||||| || ||||   |||||||||||||||||| |||||||||||||||||||  |||| ||||||    
T  33560484 tgaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattcca 33560406  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 19807217 - 19807077
Alignment:
Q  73 tcttttgagattccagctccttcacttggccatcgagttgcttctctttggagtcaagttcctcaacctgtcctttcaatgaactcatgcttgatttgag 172  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||| ||  |||||||||||||   |||   |||  |||||    
T  19807217 tctttttagattccagctccttcacttggccattgagttgcttctctttagaggcaagctccttaagttgtcctttcaatggcatcaattttgtattgag 19807118  T
Q  173 ctcctccatcatgctttcgaaatgcttctttttagattcca 213  Q
    |||||||| |  ||||| ||||||| ||| |||||||||||    
T  19807117 ctcctccacctcgcttttgaaatgcctctctttagattcca 19807077  T

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