View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_79 (Length: 296)

Name: NF1249_low_79
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_79
NF1249_low_79
[»] chr1 (5 HSPs)
chr1 (7-186)||(43357125-43357304)
chr1 (185-290)||(32593300-32593405)
chr1 (185-289)||(51823886-51823990)
chr1 (185-290)||(31526996-31527101)
chr1 (185-290)||(37030335-37030440)
[»] chr3 (5 HSPs)
chr3 (185-290)||(49207124-49207229)
chr3 (185-290)||(49211698-49211803)
chr3 (185-290)||(49202169-49202274)
chr3 (185-290)||(49190880-49190985)
chr3 (185-290)||(49187189-49187294)
[»] chr8 (1 HSPs)
chr8 (186-290)||(26756168-26756272)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 43357125 - 43357304
Alignment:
Q  7 ggaatgtagctattttgtattcgtgaaagttggtcgaataatattttgcactatagagcagctctcgtatttaatgtgagatatatgttgcatttgaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43357125 ggaatgtagctattttgtattcgtgaaagttggtcgaataatattttgcactatagagcagctctcgtatttaatgtgagatatatgttgcatttgaaaa 43357224  T
Q  107 attgtggatatgtaaattaatttacccaacgttcaataaaaattagtcatatgaataaatttacaagtgtggtacctatg 186  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43357225 tttgtggatatgtaaattaatttacccaacgttcaataaaaattagtcatatgaataaatttacaagtgtggtacgtatg 43357304  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 32593405 - 32593300
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| || ||||||||||||||||||    
T  32593405 tgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttc 32593306  T
Q  285 atctca 290  Q
     |||||    
T  32593305 ttctca 32593300  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 51823886 - 51823990
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||  ||||||||||| | ||||||||||||||| || ||||||||||||||||||    
T  51823886 tgcctcttttttctttgcgtatagatctgcttcagctgcttgcttgcacgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttc 51823985  T
Q  285 atctc 289  Q
     ||||    
T  51823986 ttctc 51823990  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 31526996 - 31527101
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    |||||||||||||||||| |||||||| ||||| ||| |||||||||| ||||||||||| | ||||| ||||||||| || ||||||||||||||||||    
T  31526996 tgcctcttttttctttgcatatagctccgcttcggctgcttgcttgcgcgcataaaatgttgcatctgacaatgctttctgtgcttctgcctctgccttc 31527095  T
Q  285 atctca 290  Q
     |||||    
T  31527096 ttctca 31527101  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 37030335 - 37030440
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    |||||| ||||||||||| || ||||||||||||||| |||| |||| |||||||||||| | ||||||| ||||||| || ||||||||||||||||||    
T  37030335 tgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttc 37030434  T
Q  285 atctca 290  Q
     |||||    
T  37030435 ttctca 37030440  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 49207124 - 49207229
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49207124 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 49207223  T
Q  285 atctca 290  Q
     |||||    
T  49207224 ttctca 49207229  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 49211698 - 49211803
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49211698 tgcctcttttttctttgcgtacagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgtgcttctgcctctgccttc 49211797  T
Q  285 atctca 290  Q
     |||||    
T  49211798 ttctca 49211803  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 49202169 - 49202274
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | ||||||  | ||||| || ||||||||||||||||||    
T  49202169 tgcctcttttttctttgcgtatagctctgcttcggcttcttgcttgcaagcataaaatgttgcatctgctgacgctttctgtgcttctgcctctgccttc 49202268  T
Q  285 atctca 290  Q
     |||||    
T  49202269 ttctca 49202274  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 49190880 - 49190985
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |  ||||| |||||||| || ||||||||||||||||||    
T  49190880 tgcctcctttttctttgcatatagctctgcttcagctgcttgcgtgcgagcataaaatgttgcgtctgctaatgctttctgtgcttctgcctctgccttc 49190979  T
Q  285 atctca 290  Q
     |||||    
T  49190980 ttctca 49190985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 49187189 - 49187294
Alignment:
Q  185 tgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttc 284  Q
    |||||| ||||||||||| || ||||||||||||||| |||| |||| |||||||||||| | ||||||| | ||||| || ||||||||||||||||||    
T  49187189 tgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgacgctttctgtgcttctgcctctgccttc 49187288  T
Q  285 atctca 290  Q
     |||||    
T  49187289 ttctca 49187294  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 290
Target Start/End: Original strand, 26756168 - 26756272
Alignment:
Q  186 gcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttca 285  Q
    ||||| || |||||||| |||||||||||||| ||| |||| || |||||||||||||| | || |||||||||| | || ||||||||||||| ||||     
T  26756168 gcctccttcttctttgcatatagctctgcttcggctgcttgtttacgagcataaaatgttgcatttgccaatgctatctgtgcttctgcctctgtcttct 26756267  T
Q  286 tctca 290  Q
    |||||    
T  26756268 tctca 26756272  T

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