View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_8 (Length: 530)

Name: NF1249_low_8
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_8
NF1249_low_8
[»] scaffold0038 (8 HSPs)
scaffold0038 (103-340)||(35687-35924)
scaffold0038 (103-340)||(28410-28647)
scaffold0038 (337-464)||(35450-35577)
scaffold0038 (103-340)||(43917-44154)
scaffold0038 (337-463)||(43681-43807)
scaffold0038 (337-459)||(28178-28300)
scaffold0038 (466-513)||(24400-24447)
scaffold0038 (215-332)||(40484-40601)
[»] chr6 (83 HSPs)
chr6 (103-340)||(28235525-28235762)
chr6 (103-340)||(28227912-28228149)
chr6 (132-340)||(28182078-28182286)
chr6 (105-340)||(28296727-28296962)
chr6 (105-340)||(28515111-28515346)
chr6 (337-464)||(28235288-28235415)
chr6 (103-340)||(28326438-28326675)
chr6 (103-340)||(28504074-28504311)
chr6 (103-340)||(28243755-28243992)
chr6 (337-463)||(28243519-28243645)
chr6 (112-340)||(28186353-28186582)
chr6 (337-464)||(28181840-28181967)
chr6 (337-464)||(28297072-28297199)
chr6 (353-464)||(28326201-28326312)
chr6 (353-464)||(28503837-28503948)
chr6 (337-464)||(28514874-28515001)
chr6 (337-464)||(28186116-28186243)
chr6 (337-459)||(28227680-28227802)
chr6 (193-333)||(26812495-26812635)
chr6 (192-291)||(29826995-29827094)
chr6 (192-332)||(26950711-26950851)
chr6 (188-332)||(26975919-26976063)
chr6 (190-333)||(28140502-28140645)
chr6 (193-334)||(27610195-27610336)
chr6 (193-334)||(27717574-27717715)
chr6 (466-513)||(28223902-28223949)
chr6 (223-333)||(25539510-25539620)
chr6 (336-438)||(26849461-26849563)
chr6 (186-275)||(26862605-26862694)
chr6 (193-334)||(31285525-31285666)
chr6 (356-452)||(26937764-26937860)
chr6 (351-459)||(29843333-29843441)
chr6 (186-273)||(26938056-26938143)
chr6 (222-333)||(27215419-27215530)
chr6 (189-264)||(28097514-28097589)
chr6 (198-335)||(29843065-29843199)
chr6 (192-334)||(25484025-25484167)
chr6 (192-334)||(26143834-26143976)
chr6 (215-332)||(28240322-28240439)
chr6 (186-334)||(26647445-26647593)
chr6 (186-334)||(26753413-26753561)
chr6 (356-419)||(26056690-26056753)
chr6 (356-419)||(26076660-26076723)
chr6 (356-419)||(27705755-27705818)
chr6 (196-334)||(25511858-25511996)
chr6 (192-334)||(25580688-25580830)
chr6 (186-332)||(27337163-27337309)
chr6 (186-332)||(27397903-27398049)
chr6 (216-334)||(27679916-27680034)
chr6 (187-333)||(28793326-28793472)
chr6 (247-337)||(29477194-29477284)
chr6 (194-256)||(31289313-31289375)
chr6 (192-333)||(25074834-25074975)
chr6 (337-458)||(28097775-28097896)
chr6 (187-279)||(25492388-25492480)
chr6 (356-444)||(25580465-25580553)
chr6 (214-334)||(26803412-26803532)
chr6 (214-334)||(26885036-26885156)
chr6 (214-278)||(27530397-27530461)
chr6 (359-419)||(27530655-27530715)
chr6 (214-334)||(27697682-27697802)
chr6 (356-428)||(27697937-27698009)
chr6 (356-419)||(25511660-25511723)
chr6 (356-419)||(26143636-26143699)
chr6 (207-334)||(26656931-26657058)
chr6 (207-334)||(26762902-26763029)
chr6 (188-279)||(27592091-27592182)
chr6 (355-401)||(26812314-26812360)
chr6 (374-428)||(27337464-27337518)
chr6 (374-428)||(27398204-27398258)
chr6 (187-333)||(28782068-28782214)
chr6 (187-333)||(28787205-28787351)
chr6 (198-327)||(26892670-26892799)
chr6 (337-438)||(26975700-26975801)
chr6 (358-419)||(27426965-27427026)
chr6 (197-330)||(27603783-27603916)
chr6 (223-279)||(26056943-26056999)
chr6 (223-279)||(26076913-26076969)
chr6 (356-416)||(26803217-26803277)
chr6 (374-438)||(26950492-26950556)
chr6 (374-438)||(26959875-26959939)
chr6 (356-420)||(28140302-28140366)
chr6 (374-450)||(29477437-29477513)
[»] scaffold0019 (2 HSPs)
scaffold0019 (112-340)||(57288-57516)
scaffold0019 (337-464)||(57626-57753)
[»] chr5 (2 HSPs)
chr5 (190-329)||(16691838-16691977)
chr5 (337-450)||(16691604-16691717)
[»] chr4 (4 HSPs)
chr4 (124-334)||(5089956-5090166)
chr4 (357-456)||(5090305-5090404)
chr4 (211-333)||(18723174-18723296)
chr4 (358-419)||(18074529-18074590)
[»] chr1 (7 HSPs)
chr1 (186-322)||(26136866-26137002)
chr1 (187-334)||(267409-267556)
chr1 (187-334)||(28126744-28126891)
chr1 (359-419)||(28127029-28127089)
chr1 (359-419)||(28163729-28163789)
chr1 (187-325)||(28163445-28163583)
chr1 (337-419)||(267672-267754)
[»] scaffold0277 (2 HSPs)
scaffold0277 (187-333)||(3781-3927)
scaffold0277 (193-333)||(12750-12890)
[»] chr2 (3 HSPs)
chr2 (192-333)||(17992289-17992430)
chr2 (337-458)||(3280388-3280509)
chr2 (189-338)||(3280621-3280770)
[»] scaffold0349 (1 HSPs)
scaffold0349 (193-334)||(2614-2755)
[»] chr8 (2 HSPs)
chr8 (186-264)||(16441092-16441170)
chr8 (193-279)||(29272913-29272999)
[»] scaffold0419 (1 HSPs)
scaffold0419 (193-333)||(8454-8594)
[»] scaffold0003 (1 HSPs)
scaffold0003 (358-419)||(60337-60398)


Alignment Details
Target: scaffold0038 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 35924 - 35687
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  35924 gaatcgaccttgttatattttaaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgac 35825  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  35824 ttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgctttagttcgtg 35725  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35724 aacatcatctagaatcaacagaaccttctttcggtgaa 35687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 28647 - 28410
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||| | |||||| ||||||||||||||||||||  || |||||||||||||||||||    
T  28647 gaatcgaccatgttatatttgaaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgac 28548  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||    
T  28547 ttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaacccgcaattgctttagtttgtg 28448  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||| |||||||| ||||| |||||||||||||    
T  28447 aacatcatcgagaatcaatagaactttctttcggtgaa 28410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 35577 - 35450
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35577 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccaattccacca 35478  T
Q  437 gtcccatagatccctagcatctgaactt 464  Q
    ||||||||||||||||||||||||||||    
T  35477 gtcccatagatccctagcatctgaactt 35450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 44154 - 43917
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    ||||| |||||||||| ||||||||  ||||||||||||||||||| | |||||  |||||||||||||  || ||  || |||||||||||||||||||    
T  44154 gaatccaccttgttatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttcaatcccatgac 44055  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    ||  |||||| ||| ||||||||||||||| ||||||| || | |||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  44054 tttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaacctgcaattgcttcagttcgtg 43955  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||| ||||| | ||||||||| ||||||||||    
T  43954 aacatcatcgagaattagcagaaccttgtttcggtgaa 43917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #5
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 337 - 463
Target Start/End: Complemental strand, 43807 - 43681
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43807 tgaattttcccttacatcgtgaagaaaacataaacaatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 43708  T
Q  437 gtcccatagatccctagcatctgaact 463  Q
    |||||||||||||||||||| ||||||    
T  43707 gtcccatagatccctagcatatgaact 43681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 28300 - 28178
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||| |    
T  28300 tgaattttcccttacatcgtgaagaaaacacaaaccatcaaattgatcggctataaaattataaactgcccttgcaagtgttgtctttcccattccacga 28201  T
Q  437 gtcccatagatccctagcatctg 459  Q
     |||| |||||||||| ||||||    
T  28200 ttcccgtagatccctatcatctg 28178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 24447 - 24400
Alignment:
Q  466 ttgatgattagagtttgtattttaatatctaaatcaaaatcattactg 513  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  24447 ttgatgattagagtttgtattttaatatttaaatcaaaatcattactg 24400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 332
Target Start/End: Complemental strand, 40601 - 40484
Alignment:
Q  215 gtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctag 314  Q
    |||||||||||||||||||||| ||| |  |  ||||||  |||||||||||  ||||||||||| |||||| |||||| ||||| |  | || ||||||    
T  40601 gtttgtctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagccaaaccctgcagttgcttcagttcatccatattatctag 40502  T
Q  315 aatcaacagaaccttctt 332  Q
    |||||| ||||| |||||    
T  40501 aatcaaaagaacattctt 40484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 83)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 28235762 - 28235525
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| | |||||| |||||||||||||||||||| ||||| |||||||||||||||||    
T  28235762 gaatcgaccttgttatattttaaagccttccacctcaacaattcaagagcttcgttctcatttaacttatctatttcgtacgttctttcaatcccatgac 28235663  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  28235662 ttgctagcaattgtttgtctcgagtggtaatgatcactttacttccaggaccaaaccaatcaatttctcccgccaaaacctgcaattgctttagttcgtg 28235563  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28235562 aacatcatctagaatcaacagaaccttctttcggtgaa 28235525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 28228149 - 28227912
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    ||||||||| |||||||||||||||| |||||||||| |||||||| | |||||| ||||||||||||||||||||  || |||||||||||||||||||    
T  28228149 gaatcgaccatgttatatttgaaagcgttccacctcatcaattcaagagcttcgttctcatttaacttatctatttcatatgctctttcaatcccatgac 28228050  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||    
T  28228049 ttgctagcaattgtttgtttcgagtggtaatgatcactttacttccaggaccaaaccaatcaagtcctccagccaaaacccgcaattgctttagtttgtg 28227950  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||| |||||||| ||||| |||||||||||||    
T  28227949 aacatcatcgagaatcaatagaactttctttcggtgaa 28227912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 132 - 340
Target Start/End: Complemental strand, 28182286 - 28182078
Alignment:
Q  132 ccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgacttgctagcaattgtttgtctcgagtggta 231  Q
    ||||||||||||||||| | |||| | ||||||||||||||||||||  || ||||||||||||||||||| | |||||||||||| |||||||||||||    
T  28182286 ccacctcaacaattcaagagcttctttctcatttaacttatctatttcatatgctctttcaatcccatgacctactagcaattgttcgtctcgagtggta 28182187  T
Q  232 atgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaacagaaccttct 331  Q
    |||||||||||| | ||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28182186 atgatcactttactaccaggaccaaaccaatcaattcctccagccaaaacctgcaattgcttcagttcgtgaacatcatctagaatcaatagaaccttct 28182087  T
Q  332 ttcggtgaa 340  Q
    |||||||||    
T  28182086 ttcggtgaa 28182078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 105 - 340
Target Start/End: Original strand, 28296727 - 28296962
Alignment:
Q  105 atcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgactt 204  Q
    |||||| ||||||| ||||||||| ||||| ||||||||||||| | |||| |  ||||||||||||| |||||  || |||||||||||||||||||      
T  28296727 atcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatatgctctttcaatcccatgacca 28296826  T
Q  205 gctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaa 304  Q
     ||||||||| ||| ||| |||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||| ||||||||||| ||||| ||||    
T  28296827 tctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaacttgcaattgcttcagttcatgaa 28296926  T
Q  305 catcatctagaatcaacagaaccttctttcggtgaa 340  Q
    |||||||||||||||||| |||||||||||||||||    
T  28296927 catcatctagaatcaacaaaaccttctttcggtgaa 28296962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 105 - 340
Target Start/End: Complemental strand, 28515346 - 28515111
Alignment:
Q  105 atcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgactt 204  Q
    |||||| ||||||| ||||||||| ||||| ||||||||||||| | |||| |  ||||||||||||| |||||  || |||||||||||||||||||      
T  28515346 atcgactttgttatttttgaaagcattccatctcaacaattcaagagcttctttgtcatttaacttatgtatttcatatgctctttcaatcccatgacca 28515247  T
Q  205 gctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaa 304  Q
     ||||||||| ||| ||| |||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||| ||||||||||| ||||| ||||    
T  28515246 tctagcaattttttttcttgagtggtaatgatcactttacttccaagaccaaaccaatcaagtcgtccagccaaaacttgcaattgcttcagttcatgaa 28515147  T
Q  305 catcatctagaatcaacagaaccttctttcggtgaa 340  Q
    |||||||||||||||||| |||||||||||||||||    
T  28515146 catcatctagaatcaacaaaaccttctttcggtgaa 28515111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 28235415 - 28235288
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28235415 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccaattccacca 28235316  T
Q  437 gtcccatagatccctagcatctgaactt 464  Q
    ||||||||||||||||||||||||||||    
T  28235315 gtcccatagatccctagcatctgaactt 28235288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 28326675 - 28326438
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    |||||||| ||||||| ||||||||  ||||||||||||||||||| | ||||   || | ||||||||   ||||  || |||||||||||||| ||||    
T  28326675 gaatcgactttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatatgctctttcaatcccgtgac 28326576  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    ||  |||||| ||||||||||||||||||| ||||||| || | |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28326575 tttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaacctgcaattgcttcagttcgtg 28326476  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  28326475 aacatcatcgagaatcaacagaaccttctttcggtgaa 28326438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 28504311 - 28504074
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    |||||||| ||||||| ||||||||  ||||||||||||||||||| | ||||   || | ||||||||   ||||  || |||||||||||||| ||||    
T  28504311 gaatcgactttgttatttttgaaagtattccacctcaacaattcaagagcttctctcttaattaacttaggaatttcatatgctctttcaatcccgtgac 28504212  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    ||  |||||| ||||||||||||||||||| ||||||| || | |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||    
T  28504211 tttttagcaaatgtttgtctcgagtggtaacgatcactctactgccaggaccgaaccaatcaagtcctccagccaaaacctgcaattgcttcagttcgtg 28504112  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  28504111 aacatcatcgagaatcaacagaaccttctttcggtgaa 28504074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 103 - 340
Target Start/End: Complemental strand, 28243992 - 28243755
Alignment:
Q  103 gaatcgaccttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgac 202  Q
    ||||| |||||||||| ||||||||  ||||||||||||||||||| | |||||  |||||||||||||  || ||  || |||||||||||||||||||    
T  28243992 gaatccaccttgttatttttgaaagaattccacctcaacaattcaagagcttcggtctcatttaacttaggtaattcatatgctctttcaatcccatgac 28243893  T
Q  203 ttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtg 302  Q
    ||  |||||| ||| ||||||||||||||| ||||||| || | |||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  28243892 tttttagcaaatgtctgtctcgagtggtaacgatcactctactaccaggaccgaaccaatcaagtcctccagctaaaacctgcaattgcttcagttcgtg 28243793  T
Q  303 aacatcatctagaatcaacagaaccttctttcggtgaa 340  Q
    ||||||||| ||||| | ||||||||| ||||||||||    
T  28243792 aacatcatcgagaattagcagaaccttgtttcggtgaa 28243755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 337 - 463
Target Start/End: Complemental strand, 28243645 - 28243519
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28243645 tgaattttcccttacatcgtgaagaaaacataaacaatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 28243546  T
Q  437 gtcccatagatccctagcatctgaact 463  Q
    |||||||||||||||||||| ||||||    
T  28243545 gtcccatagatccctagcatatgaact 28243519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 112 - 340
Target Start/End: Complemental strand, 28186582 - 28186353
Alignment:
Q  112 ttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgacttgctagca 211  Q
    ||||||| ||| |||||||||||| |||||||||||| | |||| | |||||||||||||| || ||| || ||||||||||||||||||   |||||||    
T  28186582 ttgttattttttaaagccttccacgtcaacaattcaagagcttctttctcatttaacttatgtaatttatatgctctttcaatcccatgatgagctagca 28186483  T
Q  212 attgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaa-ttgctttagttcgtgaacatcat 310  Q
    ||||||||||||||||||||||||||||  || | |||||||||||||||  || | ||||||||||||| | ||| | |||||||||||||||||||||    
T  28186482 attgtttgtctcgagtggtaatgatcacaatactaccaggaccaaaccaacgaaatcctccagccaaaacttccaactggctttagttcgtgaacatcat 28186383  T
Q  311 ctagaatcaacagaaccttctttcggtgaa 340  Q
    | |||||||||| |||||||||| ||||||    
T  28186382 cgagaatcaacaaaaccttcttttggtgaa 28186353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 28181967 - 28181840
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||    
T  28181967 tgaatttgcccttatgtcgttaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagcgtcgtctttcccattcctcca 28181868  T
Q  437 gtcccatagatccctagcatctgaactt 464  Q
    ||||||||||||||||||||||||||||    
T  28181867 gtcccatagatccctagcatctgaactt 28181840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 337 - 464
Target Start/End: Original strand, 28297072 - 28297199
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  28297072 tgaattttcccttacattgtgaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccatccctcca 28297171  T
Q  437 gtcccatagatccctagcatctgaactt 464  Q
    ||||||||||||||||||||||||||||    
T  28297172 gtcccatagatccctagcatctgaactt 28297199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 353 - 464
Target Start/End: Complemental strand, 28326312 - 28326201
Alignment:
Q  353 tcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 452  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326312 tcgttaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 28326213  T
Q  453 gcatctgaactt 464  Q
    ||||||||||||    
T  28326212 gcatctgaactt 28326201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 353 - 464
Target Start/End: Complemental strand, 28503948 - 28503837
Alignment:
Q  353 tcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 452  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28503948 tcgttaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 28503849  T
Q  453 gcatctgaactt 464  Q
    ||||||||||||    
T  28503848 gcatctgaactt 28503837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 28515001 - 28514874
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||    
T  28515001 tgaattttcccttacattgtgaagaaaacacaaaccatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccatccctcca 28514902  T
Q  437 gtcccatagatccctagcatctgaactt 464  Q
    ||||||||||||||||||||||||||||    
T  28514901 gtcccatagatccctagcatctgaactt 28514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 337 - 464
Target Start/End: Complemental strand, 28186243 - 28186116
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||    
T  28186243 tgaatttccccttacatcgtgaagaaaacacaaatcatcaaattgatcagctagggaattataaactgctcttgcaagtgtcgtctttcccattcctcca 28186144  T
Q  437 gtcccatagatccctagcatctgaactt 464  Q
    | ||||||||||||||||||||||||||    
T  28186143 ggcccatagatccctagcatctgaactt 28186116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 337 - 459
Target Start/End: Complemental strand, 28227802 - 28227680
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||||||||||| |    
T  28227802 tgaattttcccttacatcgtgaagaaaacacaaaccatcaaattgatcggctataaaattataaactgcccttgcaagtgttgtctttcccattccacga 28227703  T
Q  437 gtcccatagatccctagcatctg 459  Q
     |||| |||||||||| ||||||    
T  28227702 ttcccgtagatccctatcatctg 28227680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 26812635 - 26812495
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgct 292  Q
    |||||||||| || |||||| ||| ||||||||||||||||||| ||| || |||||||||| | |||| || | |||||| ||||||||| ||||||||    
T  26812635 atcccatgacatgatagcaaatgtctgtctcgagtggtaatgatgactctacttccaggaccgagccaaccaggctctccaaccaaaaccttcaattgct 26812536  T
Q  293 ttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
    || ||| || ||||||||| |||||||||| ||| ||||||    
T  26812535 ttggtttgtcaacatcatcgagaatcaacaaaactttcttt 26812495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 192 - 291
Target Start/End: Complemental strand, 29827094 - 29826995
Alignment:
Q  192 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgc 291  Q
    |||||||||||||| |||||| |||| |||||||||||||||||||||| |  | ||||||||||||||||||||| |||| |||| ||| |||||||||    
T  29827094 aatcccatgacttgttagcaaatgttggtctcgagtggtaatgatcactatgctgccaggaccaaaccaatcaagtcctcccgccataacttgcaattgc 29826995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 26950851 - 26950711
Alignment:
Q  192 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgc 291  Q
    ||||||||||| || || ||| |||||||| |||||||||||||| ||| |  | ||| |||||| |||| || | ||||||  ||||||||||||||||    
T  26950851 aatcccatgacatgataacaaatgtttgtcacgagtggtaatgatgactctgctgccacgaccaagccaaccaggctctccaatcaaaacctgcaattgc 26950752  T
Q  292 tttagttcgtgaacatcatctagaatcaacagaaccttctt 332  Q
    |||| || || ||||||||| |||||||||| ||| |||||    
T  26950751 tttattttgtcaacatcatcgagaatcaacaaaactttctt 26950711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 188 - 332
Target Start/End: Complemental strand, 26976063 - 26975919
Alignment:
Q  188 tttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaa 287  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||||| ||| |  | ||| |||||| |||| || | |||||   ||||||||||||    
T  26976063 tttcaatccgatgacctgatagcaattgtttgtctcgagtggtaatgatgactctgctgccatgaccaagccaaccaggctctccgatcaaaacctgcaa 26975964  T
Q  288 ttgctttagttcgtgaacatcatctagaatcaacagaaccttctt 332  Q
    |||||||| || || ||  ||||| |||||||||| ||| |||||    
T  26975963 ttgctttattttgtcaatgtcatcgagaatcaacaaaactttctt 26975919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 333
Target Start/End: Complemental strand, 28140645 - 28140502
Alignment:
Q  190 tcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaatt 289  Q
    ||||||||||||| ||||||||| |||||||||||||| |||| ||  ||   | | ||| |||||| ||||| | | |||||||||||||||| ||| |    
T  28140645 tcaatcccatgacatgctagcaaatgtttgtctcgagttgtaacgacaacccgactaccatgaccaagccaattagggtctccagccaaaaccttcaact 28140546  T
Q  290 gctttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
    | |||||||| | ||| ||||| |||||||| ||||||||||||    
T  28140545 gttttagttcatcaacgtcatcgagaatcaaaagaaccttcttt 28140502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 27610195 - 27610336
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgct 292  Q
    ||||||||||  | |||||| |||||||||||||||| |||||| |||||  ||||| | || ||||||||| || ||||||||||| | || | |||||    
T  27610195 atcccatgacaggttagcaagtgtttgtctcgagtggcaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgct 27610294  T
Q  293 ttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    | |  | || ||||||||| |||||||| |||||||||||||    
T  27610295 tcatattgtcaacatcatcaagaatcaaaagaaccttctttc 27610336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 27717574 - 27717715
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgct 292  Q
    ||||||||||  | ||| || ||||||||||||||||||||||| |||||  ||||| | || ||||||||| || ||||||||||| | || | |||||    
T  27717574 atcccatgacaggttagtaagtgtttgtctcgagtggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgct 27717673  T
Q  293 ttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    | |  | || ||||||||| |||||||| |||||||||||||    
T  27717674 tcatattgtcaacatcatcaagaatcaaaagaaccttctttc 27717715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 466 - 513
Target Start/End: Complemental strand, 28223949 - 28223902
Alignment:
Q  466 ttgatgattagagtttgtattttaatatctaaatcaaaatcattactg 513  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  28223949 ttgatgattagagtttgtattttaatatttaaatcaaaatcattactg 28223902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 25539620 - 25539510
Alignment:
Q  223 cgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaaca 322  Q
    |||||||||||||| ||| |  |||||||||| |||||||||||| ||||||||||| |||  |  |||| ||||| || ||||||||| |||||||| |    
T  25539620 cgagtggtaatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctctagctgctctagtttgtcaacatcatcaagaatcaaaa 25539521  T
Q  323 gaaccttcttt 333  Q
    ||| |||||||    
T  25539520 gaatcttcttt 25539510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 438
Target Start/End: Complemental strand, 26849563 - 26849461
Alignment:
Q  336 gtgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacc 435  Q
    |||||||||| || || |||||||| ||||||  ||  |||||||||||||| || |||||||||||||||   ||||||||||| ||||||||||| ||    
T  26849563 gtgaattttctctcacatcgtgaaggaaacacttacattcaaattgatcagcaatcgaattataaactgcttgagcaagtgttgtttttcccattcctcc 26849464  T
Q  436 agt 438  Q
    |||    
T  26849463 agt 26849461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 26862694 - 26862605
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagc 275  Q
    |||||| |||||||| | || ||| || ||||| ||||||||||||||||| ||| || ||||| ||||||||||||||||| |||||||    
T  26862694 tctttctatcccatggcatgttagtaagtgtttatctcgagtggtaatgatgactctacttccatgaccaaaccaatcaagtcctccagc 26862605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 334
Target Start/End: Complemental strand, 31285666 - 31285525
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgct 292  Q
    |||||||||||   ||| || ||||||||||||||||||||||| ||| |  ||||| | || |||||||||||| ||||||||||| | |||| ||| |    
T  31285666 atcccatgactacttagtaagtgtttgtctcgagtggtaatgatgactctgcttccacggccgaaccaatcaagtcctccagccaaagcatgcagttgat 31285567  T
Q  293 ttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    | |  | || ||||||||| |||||||| |||| ||||||||    
T  31285566 tcatattgtcaacatcatcgagaatcaaaagaatcttctttc 31285525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 452
Target Start/End: Complemental strand, 26937860 - 26937764
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatcccta 452  Q
    ||||||||||||||||  |||||||||||| | ||  ||||||||| ||||| |||||||||||  || || ||||| ||| |||||||||||||||    
T  26937860 tgaagaaaacacaaactttcaaattgatcaccaatcaaattataaattgctcgtgcaagtgttgatttaccaattccgccaatcccatagatcccta 26937764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 459
Target Start/End: Original strand, 29843333 - 29843441
Alignment:
Q  351 cgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccc 450  Q
    |||||||||||||||||||||  ||||||| |||||| ||  ||||||||| |||||  ||||||||||| || |||| ||||||| | ||||| |||||    
T  29843333 cgtcgtgaagaaaacacaaacattcaaatttatcagcaatcaaattataaattgctcgagcaagtgttgttttacccaatccaccaattccataaatccc 29843432  T
Q  451 tagcatctg 459  Q
     | ||||||    
T  29843433 caccatctg 29843441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 26938143 - 26938056
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctcca 273  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||  || |||||  ||||| |||||| ||||| | ||||||||    
T  26938143 tctttcaatcccatgacatgatagcaaatgtttgtctcgagtggtaacaatgactttgcttccatgaccaagccaattaggttctcca 26938056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 27215530 - 27215419
Alignment:
Q  222 tcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaac 321  Q
    |||||| |||||||| ||| || |||||  |||||||||||||||| ||||||||||| |||  |  |||| ||||| || ||||||||| ||||||||     
T  27215530 tcgagtcgtaatgatgactctacttccaccaccaaaccaatcaagtcctccagccaaagcctctagctgctctagtttgtcaacatcatcaagaatcaaa 27215431  T
Q  322 agaaccttcttt 333  Q
    |||| |||||||    
T  27215430 agaatcttcttt 27215419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 28097514 - 28097589
Alignment:
Q  189 ttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatca 264  Q
    |||||||||||||||||||||||| | ||| |||||||||||||  |||||| || | |||| |||||||||||||    
T  28097514 ttcaatcccatgacttgctagcaagtttttatctcgagtggtaacaatcactctactgccagcaccaaaccaatca 28097589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 29843065 - 29843199
Alignment:
Q  198 atgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagt 297  Q
    |||||||| |||||| |||| |||||||||   |||||||||| |  | |||||||||||||| |||||| | || |||| ||| ||||||||| ||||     
T  29843065 atgacttgttagcaaatgttggtctcgagt---aatgatcactctgctaccaggaccaaaccagtcaagtccgcccgccataacttgcaattgccttagg 29843161  T
Q  298 tcgtgaacatcatctagaatcaacagaaccttctttcg 335  Q
    | || |||||| || |||||||| ||||| ||||||||    
T  29843162 ttgtcaacatcgtcaagaatcaaaagaactttctttcg 29843199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 25484167 - 25484025
Alignment:
Q  192 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgc 291  Q
    |||||||||||  ||||| || ||||| || |||||||||||||| ||| |  ||||| |||| |||||||||||| ||||||||||| |||  |  |||    
T  25484167 aatcccatgacaggctagtaagtgtttatcacgagtggtaatgatgactctgcttccatgaccgaaccaatcaagtcctccagccaaagcctctagctgc 25484068  T
Q  292 tttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    |  |||| || ||||||||| | |||||| |||| ||||||||    
T  25484067 tccagtttgtcaacatcatcaacaatcaaaagaatcttctttc 25484025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 26143976 - 26143834
Alignment:
Q  192 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgc 291  Q
    |||||||||||  ||||| || ||||| || |||||||||||||| ||  |  ||||| |||| |||||||||||| ||||||||||| |||  |  |||    
T  26143976 aatcccatgacaggctagtaagtgtttatcacgagtggtaatgatgaccctgcttccatgaccgaaccaatcaagtcctccagccaaagcctctagctgc 26143877  T
Q  292 tttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    |  |||| || ||||||||| |||||||| |||| ||||||||    
T  26143876 tccagtttgtcaacatcatcaagaatcaaaagaatcttctttc 26143834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 332
Target Start/End: Complemental strand, 28240439 - 28240322
Alignment:
Q  215 gtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctag 314  Q
    |||||||||||||||||||||| ||| |  |  ||||||  |||||||||||  ||||||||||| |||||| |||||| ||||| |  | || ||||||    
T  28240439 gtttgtctcgagtggtaatgatgactctgctgtcaggactgaaccaatcaagccctccagccaaaccctgcagttgcttcagttcatccatattatctag 28240340  T
Q  315 aatcaacagaaccttctt 332  Q
    |||||| ||||| |||||    
T  28240339 aatcaaaagaacattctt 28240322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 334
Target Start/End: Complemental strand, 26647593 - 26647445
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgc 285  Q
    |||||| ||||||||||  | ||| || ||||| ||||| ||||| ||||| ||| |  |||||||||| |||||||||||| ||||||||||| |||      
T  26647593 tctttctatcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctct 26647494  T
Q  286 aattgctttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    |  || |  |||| || ||||||||| |||||||| |||| ||||||||    
T  26647493 agctgatccagttggttaacatcatcgagaatcaaaagaatcttctttc 26647445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 334
Target Start/End: Complemental strand, 26753561 - 26753413
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgc 285  Q
    |||||| ||||||||||  | ||| || ||||| ||||| ||||| ||||| ||| |  |||||||||| |||||||||||| ||||||||||| |||      
T  26753561 tctttctatcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctct 26753462  T
Q  286 aattgctttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    |  || |  |||| || ||||||||| |||||||| |||| ||||||||    
T  26753461 agctgatccagttggttaacatcatcgagaatcaaaagaatcttctttc 26753413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 26056753 - 26056690
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||||| | ||| |||||||||||||| || |||||| |||||||| ||||||||||||    
T  26056753 tgaagaaaacatacaccttcaaattgatcagcaatagaattaaaaactgcttttgcaagtgttg 26056690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 26076723 - 26076660
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||||| | ||| |||||||||||||| || |||||| |||||||| ||||||||||||    
T  26076723 tgaagaaaacatacaccttcaaattgatcagcaatagaattaaaaactgcttttgcaagtgttg 26076660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 419
Target Start/End: Original strand, 27705755 - 27705818
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||||| ||||| |||||||||||||| |   ||||||||| |||||||||||||||||    
T  27705755 tgaagaaaacataaaccttcaaattgatcagcaacaaaattataaattgctcttgcaagtgttg 27705818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 334
Target Start/End: Complemental strand, 25511996 - 25511858
Alignment:
Q  196 ccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgcttta 295  Q
    |||||||  ||||| || ||||| || |||||||||||||| ||| |  |||||||||| ||||| |||||| ||||||||||| |||  |  ||||  |    
T  25511996 ccatgacaggctagtaagtgtttatcacgagtggtaatgatgactctgcttccaggaccgaaccagtcaagtcctccagccaaagcctctagctgctcca 25511897  T
Q  296 gttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    ||| || |||||| || |||||||| |||| ||||||||    
T  25511896 gtttgtcaacatcgtcaagaatcaaaagaatcttctttc 25511858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 334
Target Start/End: Complemental strand, 25580830 - 25580688
Alignment:
Q  192 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgc 291  Q
    |||||||||||  ||||| || ||||| || |||||||||||||| ||  |  ||||| |||| |||||||||||| ||||||||||| |||  |  |||    
T  25580830 aatcccatgacaggctagtaagtgtttatcacgagtggtaatgatgacactgcttccatgaccgaaccaatcaagtcctccagccaaagcctctagctgc 25580731  T
Q  292 tttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    |  |||| || ||||||||| | |||||| |||| ||||||||    
T  25580730 tccagtttgtcaacatcatcaaaaatcaaaagaatcttctttc 25580688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 27337163 - 27337309
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgc 285  Q
    |||||| ||||||||||  | ||| || ||||| ||||| ||||| ||||| ||| |  |||||||||| |||||||||||| ||||||||||| |||      
T  27337163 tctttctatcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctct 27337262  T
Q  286 aattgctttagttcgtgaacatcatctagaatcaacagaaccttctt 332  Q
    |  || |  |||| || ||||||||| |||||||| |||| ||||||    
T  27337263 agctgatccagttggtcaacatcatcgagaatcaaaagaatcttctt 27337309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 332
Target Start/End: Original strand, 27397903 - 27398049
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgc 285  Q
    |||||| ||||||||||  | ||| || ||||| ||||| ||||| ||||| ||| |  |||||||||| |||||||||||| ||||||||||| |||      
T  27397903 tctttctatcccatgacaggttagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaagcctct 27398002  T
Q  286 aattgctttagttcgtgaacatcatctagaatcaacagaaccttctt 332  Q
    |  || |  |||| || ||||||||| |||||||| |||| ||||||    
T  27398003 agctgatccagttggtcaacatcatcgagaatcaaaagaatcttctt 27398049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 27680034 - 27679916
Alignment:
Q  216 tttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctaga 315  Q
    ||||| ||||||||||||||| ||| |  |||||   || |||||||||||| ||||||||||| | |||| |||||| |  | || ||||||||| |||    
T  27680034 tttgtttcgagtggtaatgatgactctgcttccacatccgaaccaatcaagtcctccagccaaagcatgcagttgcttcaaattgtcaacatcatcgaga 27679935  T
Q  316 atcaacagaaccttctttc 334  Q
    ||||| |||| ||||||||    
T  27679934 atcaaaagaatcttctttc 27679916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 28793472 - 28793326
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgca 286  Q
    ||||| ||||||||||||  ||| || |||||||||||||| |||||||| ||  |  ||||| | || ||||||||| || |||| |||||| | || |    
T  28793472 ctttctatcccatgacttcttagtaagtgtttgtctcgagtcgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgta 28793373  T
Q  287 attgctttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
     |||||| |  |||| ||||||||| |||||||| |||| |||||||    
T  28793372 gttgcttcatatcgtcaacatcatcgagaatcaaaagaatcttcttt 28793326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 29477194 - 29477284
Alignment:
Q  247 ccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggt 337  Q
    ||||||||||||||||||||| ||||||||||| ||| || ||||| ||||  ||  ||||||||||| || |  ||||| ||||||||||    
T  29477194 ccaggaccaaaccaatcaagtcctccagccaaagcctccatttgctctagtctgtccacatcatctaggatgagaagaactttctttcggt 29477284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Complemental strand, 31289375 - 31289313
Alignment:
Q  194 tcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaa 256  Q
    ||||||||| || ||||||||||||||||| |||||||||||| ||| |  ||||||||||||    
T  31289375 tcccatgacctgatagcaattgtttgtctcaagtggtaatgatgactctgcttccaggaccaa 31289313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 192 - 333
Target Start/End: Complemental strand, 25074975 - 25074834
Alignment:
Q  192 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgc 291  Q
    ||||||||||  || || ||| ||||||||||||||||||||||| ||| |  | ||| |||| | |||   | | |||||  |||||||||||||||||    
T  25074975 aatcccatgagatgataacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccgagccagctaggctctccgaccaaaacctgcaattgc 25074876  T
Q  292 tttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
    ||||||| || ||  ||||| |||||||||| ||| ||||||    
T  25074875 tttagtttgtcaatgtcatcgagaatcaacaaaactttcttt 25074834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 337 - 458
Target Start/End: Original strand, 28097775 - 28097896
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||| || || | |||||| ||||| | ||  ||||||||| |||| ||| |||||||||| ||| |||||||||||||||| || || || ||     
T  28097775 tgaattttctctcacattgtgaaggaaacagacacattcaaattgaccagcaatgaaattataaaccgcttttgcaagtgttgtcttacctatccctcct 28097874  T
Q  437 gtcccatagatccctagcatct 458  Q
    |  ||||||||||| |||||||    
T  28097875 ggtccatagatcccaagcatct 28097896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 25492388 - 25492480
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaa 279  Q
    ||||| ||||||||||| | ||| |  ||||||||||||||||||||||| |||    ||||| |||| |||||||||||| || ||||||||    
T  25492388 ctttctatcccatgactggttagtatgtgtttgtctcgagtggtaatgataactccgcttccacgaccgaaccaatcaagtccttcagccaaa 25492480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 444
Target Start/End: Complemental strand, 25580553 - 25580465
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccata 444  Q
    ||||||||||| | ||| |||||||||||||| |   |||||||||||||| ||||||||||||  || ||||| || ||||| |||||    
T  25580553 tgaagaaaacatacaccttcaaattgatcagcaacaaaattataaactgcttttgcaagtgttgatttacccatgcctccagtaccata 25580465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 26803532 - 26803412
Alignment:
Q  214 tgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatcta 313  Q
    ||||||||||||||||||||||| ||  |  ||||| | |||||||||||| || ||||||||||| | || | |||||  |  |||| ||||||||| |    
T  26803532 tgtttgtctcgagtggtaatgatgaccctgcttccatggccaaaccaatcaggtcctccagccaaagcatgtagttgctccatatcgtcaacatcatcga 26803433  T
Q  314 gaatcaacagaaccttctttc 334  Q
    ||||||| |||| ||| ||||    
T  26803432 gaatcaaaagaatcttatttc 26803412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 26885156 - 26885036
Alignment:
Q  214 tgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatcta 313  Q
    ||||| || |||||||||||||| ||  |  ||||| ||||||||||||||||| ||||||||||| |||  |  ||||  | || || ||||||||| |    
T  26885156 tgtttatcacgagtggtaatgatgaccctgcttccacgaccaaaccaatcaagtcctccagccaaagcctctagctgctccattttgtcaacatcatcaa 26885057  T
Q  314 gaatcaacagaaccttctttc 334  Q
    ||||||| |||| ||||||||    
T  26885056 gaatcaaaagaatcttctttc 26885036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 27530397 - 27530461
Alignment:
Q  214 tgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaa 278  Q
    ||||||| |||||| |||||||| ||| || | |||||||| |||||||||||| ||||||||||    
T  27530397 tgtttgtttcgagtagtaatgatgactctactcccaggaccgaaccaatcaagtcctccagccaa 27530461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 27530655 - 27530715
Alignment:
Q  359 agaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    |||||||| ||| | |||||||||||||| ||| ||||||||| |||| ||||||||||||    
T  27530655 agaaaacataaaacttcaaattgatcagcaatgaaattataaattgcttttgcaagtgttg 27530715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 27697682 - 27697802
Alignment:
Q  214 tgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatcta 313  Q
    ||||| ||||| ||||| ||||| ||| |  ||||||||||||||||||| ||| ||||||||||| |||| |  || |  |||| || |||||| || |    
T  27697682 tgtttatctcgggtggtgatgatgactctgcttccaggaccaaaccaatcgagtcctccagccaaagcctgtagctgatccagtttgtcaacatcgtcga 27697781  T
Q  314 gaatcaacagaaccttctttc 334  Q
    ||||||| |||| ||||||||    
T  27697782 gaatcaaaagaatcttctttc 27697802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 428
Target Start/End: Original strand, 27697937 - 27698009
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccca 428  Q
    ||||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||  |||||||    
T  27697937 tgaagaaaacataaaccttcaaattgatcagcaaccaaattatagattgctcttgcaagtgttgattttccca 27698009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 25511723 - 25511660
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||||| | ||  |||||||||||||| || |||||| |||||||| ||||||||||||    
T  25511723 tgaagaaaacatacactttcaaattgatcagcaatagaattaaaaactgcttttgcaagtgttg 25511660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 419
Target Start/End: Complemental strand, 26143699 - 26143636
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||||| | ||| |||||||||||||| |   |||||||||||||| ||||||||||||    
T  26143699 tgaagaaaacatacaccttcaaattgatcagcaacaaaattataaactgcttttgcaagtgttg 26143636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 26657058 - 26656931
Alignment:
Q  207 tagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaaca 306  Q
    |||||| ||||| |||| |||||||||||| ||| |  |||||  ||| |||||||||||| |||| |||||| |||  |  ||||  |||| || ||||    
T  26657058 tagcaagtgtttatctctagtggtaatgatgactctgcttccacaaccgaaccaatcaagtcctcctgccaaagcctctagctgctccagtttgtcaaca 26656959  T
Q  307 tcatctagaatcaacagaaccttctttc 334  Q
    ||||| |||||||| |||| ||||||||    
T  26656958 tcatcgagaatcaaaagaatcttctttc 26656931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 26763029 - 26762902
Alignment:
Q  207 tagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaaca 306  Q
    |||||| ||||| |||| |||||||||||| ||| |  |||||  ||| |||||||||||| |||| |||||| |||  |  ||||  |||| || ||||    
T  26763029 tagcaagtgtttatctctagtggtaatgatgactctgcttccacaaccgaaccaatcaagtcctcctgccaaagcctctagctgctccagtttgtcaaca 26762930  T
Q  307 tcatctagaatcaacagaaccttctttc 334  Q
    ||||| |||||||| |||| ||||||||    
T  26762929 tcatcgagaatcaaaagaatcttctttc 26762902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 279
Target Start/End: Original strand, 27592091 - 27592182
Alignment:
Q  188 tttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaa 279  Q
    |||| ||||||||||   |||| || ||||| ||||| ||||| ||||| ||| |  |||||||||| |||||||||||| |||||||||||    
T  27592091 tttctatcccatgacagtctagtaagtgtttatctcgggtggtgatgatgactctgcttccaggaccgaaccaatcaagtcctccagccaaa 27592182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 26812360 - 26812314
Alignment:
Q  355 gtgaagaaaacacaaaccatcaaattgatcagctatggaattataaa 401  Q
    |||||| |||||||||||||||||||||||||| ||  |||||||||    
T  26812360 gtgaaggaaacacaaaccatcaaattgatcagcaatcaaattataaa 26812314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #69
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 27337464 - 27337518
Alignment:
Q  374 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccca 428  Q
    |||||||||||||| ||| ||||||||| |||| ||||||||||||  |||||||    
T  27337464 tcaaattgatcagcaatgaaattataaattgcttttgcaagtgttgattttccca 27337518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #70
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 27398204 - 27398258
Alignment:
Q  374 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccca 428  Q
    |||||||||||||| ||| ||||||||| |||| ||||||||||||  |||||||    
T  27398204 tcaaattgatcagcaatgaaattataaattgcttttgcaagtgttgattttccca 27398258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #71
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 28782214 - 28782068
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgca 286  Q
    ||||| ||||||||||||  ||| || ||||||||||||||||||||||| ||  |  ||||| | || ||||||||| || |||| |||||| | || |    
T  28782214 ctttctatcccatgacttcttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgta 28782115  T
Q  287 attgctttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
     |||||  |  |||| ||||||||| |||||||| |||  |||||||    
T  28782114 gttgctccatatcgtcaacatcatcgagaatcaaaagagtcttcttt 28782068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #72
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 187 - 333
Target Start/End: Complemental strand, 28787351 - 28787205
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgca 286  Q
    ||||| ||||||||||||  ||| || |||||||||||||| |||||||| ||  |  ||||| | || ||||||||| || |||| |||||| | || |    
T  28787351 ctttctatcccatgacttcttagtaagtgtttgtctcgagtcgtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgta 28787252  T
Q  287 attgctttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
     |||||| |  |||| ||||||||| |||||||| |||  |||||||    
T  28787251 gttgcttcatatcgtcaacatcatcgagaatcaaaagagtcttcttt 28787205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #73
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 327
Target Start/End: Original strand, 26892670 - 26892799
Alignment:
Q  198 atgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagt 297  Q
    ||||||||||||||| | | |||||||||| |||| |||||||  | | |||  |||||||||||| ||| | ||||| |  |  |||| |||||||| |    
T  26892670 atgacttgctagcaaatttctgtctcgagtagtaacgatcactcgactaccaataccaaaccaatcgagtccaccagcaatgaattgcagttgctttaat 26892769  T
Q  298 tcgtgaacatcatctagaatcaacagaacc 327  Q
    |||| ||||||||||| || ||| ||||||    
T  26892770 tcgtcaacatcatctaaaaccaatagaacc 26892799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #74
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 438
Target Start/End: Complemental strand, 26975801 - 26975700
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||| || || |||||||| |||||   ||  |||||||||| ||| ||  ||||||||||||||   |||||||||||||| |||||||| |||    
T  26975801 tgaattttctctcacatcgtgaaggaaacagttacattcaaattgattagcaatcaaattataaactgcttgagcaagtgttgtcttacccattccccca 26975702  T
Q  437 gt 438  Q
    ||    
T  26975701 gt 26975700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #75
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 419
Target Start/End: Original strand, 27426965 - 27427026
Alignment:
Q  358 aagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||    
T  27426965 aagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttg 27427026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #76
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 330
Target Start/End: Original strand, 27603783 - 27603916
Alignment:
Q  197 catgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttag 296  Q
    ||||||| | ||| || ||| ||||||||||||||||||| ||  |  ||||| | |||||||||||| ||||||| |||||| |||| | ||||   |     
T  27603783 catgactggttagtaagtgtctgtctcgagtggtaatgatgaccctgcttccaagcccaaaccaatcaggttctcctgccaaagcctgtagttgccccat 27603882  T
Q  297 ttcgtgaacatcatctagaatcaacagaaccttc 330  Q
     |||| ||||||||| |||||||| |||| ||||    
T  27603883 atcgtcaacatcatcgagaatcaaaagaatcttc 27603916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #77
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 26056999 - 26056943
Alignment:
Q  223 cgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaa 279  Q
    |||||||||||||| ||| |  ||||| |||| |||||||||||| |||||||||||    
T  26056999 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagccaaa 26056943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #78
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 26076969 - 26076913
Alignment:
Q  223 cgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaa 279  Q
    |||||||||||||| ||| |  ||||| |||| |||||||||||| |||||||||||    
T  26076969 cgagtggtaatgatgactctgcttccaagaccgaaccaatcaagtcctccagccaaa 26076913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #79
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 26803277 - 26803217
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtg 416  Q
    ||||||||||| ||||| |||||||||||||| |   ||||||| | ||||||||||||||    
T  26803277 tgaagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtg 26803217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #80
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 26950556 - 26950492
Alignment:
Q  374 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagt 438  Q
    |||||||||| ||| ||  | ||||||||||||   ||||||||||||||||||||||| |||||    
T  26950556 tcaaattgattagcaatcaagttataaactgcttgagcaagtgttgtctttcccattcccccagt 26950492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #81
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 438
Target Start/End: Complemental strand, 26959939 - 26959875
Alignment:
Q  374 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagt 438  Q
    |||||||||| | | || |||||||||||||||   | ||||||||||||||||||||| |||||    
T  26959939 tcaaattgatgaacaatcgaattataaactgcttgagaaagtgttgtctttcccattcctccagt 26959875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #82
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 28140366 - 28140302
Alignment:
Q  356 tgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgt 420  Q
    ||||||||||||||||  ||||||||||| || ||  ||||||||| ||||  ||||||||||||    
T  28140366 tgaagaaaacacaaacattcaaattgatcggcaataaaattataaattgcttgtgcaagtgttgt 28140302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #83
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 29477437 - 29477513
Alignment:
Q  374 tcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccc 450  Q
    ||||||||||| |  || | ||||||||||||||  ||||||||||| || || ||||| ||| |||||||||||||    
T  29477437 tcaaattgatccgaaatcgtattataaactgctcgagcaagtgttgttttccctattccgccaatcccatagatccc 29477513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 112 - 340
Target Start/End: Original strand, 57288 - 57516
Alignment:
Q  112 ttgttatatttgaaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgacttgctagca 211  Q
    ||||||| ||||||||| ||||||||||||||||||| | |||| | ||||||||||||||||||||  || ||||||||||||||||||| ||||||||    
T  57288 ttgttatttttgaaagcattccacctcaacaattcaagagcttctttctcatttaacttatctatttcatatgctctttcaatcccatgacctgctagca 57387  T
Q  212 attgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatc 311  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||||||    
T  57388 attgttcgtctcgagtggtaatgatcactttactaccaggaccaaaccaatcaagtcctccagccaaaacctgtaattgcttcagctcgtgaacatcatc 57487  T
Q  312 tagaatcaacagaaccttctttcggtgaa 340  Q
     |||||||||| |||||||||||||||||    
T  57488 gagaatcaacaaaaccttctttcggtgaa 57516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 337 - 464
Target Start/End: Original strand, 57626 - 57753
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||    
T  57626 tgaattttcccttacgtcgtgaagaaaacacaaatcatcaaattgatcggctatggaattaaaaactgctctagcaagtgttgtctttcccattcctcca 57725  T
Q  437 gtcccatagatccctagcatctgaactt 464  Q
     | || ||||||||||||||||||||||    
T  57726 attccgtagatccctagcatctgaactt 57753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 190 - 329
Target Start/End: Complemental strand, 16691977 - 16691838
Alignment:
Q  190 tcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaatt 289  Q
    ||||| |||||||||| ||| || ||||||||||||||||||||||| ||| || |||||||||||||||||||  | |||||| ||| ||| |||||||    
T  16691977 tcaataccatgacttgttagtaagtgtttgtctcgagtggtaatgatgactctacttccaggaccaaaccaatcgggctctccaaccataacttgcaatt 16691878  T
Q  290 gctttagttcgtgaacatcatctagaatcaacagaacctt 329  Q
    ||||| | || | ||||||||| |||||||| ||||||||    
T  16691877 gcttttgctcatcaacatcatcgagaatcaaaagaacctt 16691838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 450
Target Start/End: Complemental strand, 16691717 - 16691604
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||| || ||||| ||||||||||||||||  |||||||||||||| ||  ||||||||| |||||  ||||||||||| || || ||||| |||    
T  16691717 tgaattttctctcacgtcatgaagaaaacacaaacattcaaattgatcagcaatcaaattataaattgctcgagcaagtgttgttttaccgattcctcca 16691618  T
Q  437 gtcccatagatccc 450  Q
     | |||| ||||||    
T  16691617 attccatggatccc 16691604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 124 - 334
Target Start/End: Original strand, 5089956 - 5090166
Alignment:
Q  124 aaagccttccacctcaacaattcaatatcttcgtactcatttaacttatctattttgtacgctctttcaatcccatgacttgctagcaattgtttgtctc 223  Q
    |||||||||||||| || |||| || | |||||| |||||||||   ||||| || ||| | | | ||||||||||||| |  |||||| ||||||||||    
T  5089956 aaagccttccaccttaataattgaagagcttcgttctcatttaaaccatctacttcgtatgttatatcaatcccatgacattttagcaagtgtttgtctc 5090055  T
Q  224 gagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcatctagaatcaacag 323  Q
    ||||||||||||| ||| |  | ||| |||||||||||||| ||||||| ||||||||||| | ||| || |||| || || |||||| |||||||| ||    
T  5090056 gagtggtaatgatgactctgctgccaagaccaaaccaatcaggttctccggccaaaacctgtagttgtttcagtttgtcaatatcatcgagaatcaaaag 5090155  T
Q  324 aaccttctttc 334  Q
    ||| |||||||    
T  5090156 aactttctttc 5090166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 456
Target Start/End: Original strand, 5090305 - 5090404
Alignment:
Q  357 gaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcat 456  Q
    |||||||||| | ||  |||||||||| ||| ||| |||| |||| |||| || ||||||| || || |||||||| |||||||||||||||||||||||    
T  5090305 gaagaaaacaaagacattcaaattgatgagcaatgaaattgtaaattgcttttccaagtgtggttttacccattcctccagtcccatagatccctagcat 5090404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 333
Target Start/End: Original strand, 18723174 - 18723296
Alignment:
Q  211 aattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgctttagttcgtgaacatcat 310  Q
    ||||||||||  |||||||||||||| ||| |  ||||||  || ||||||||| || ||||||||||| | |||| ||| || |  | || ||||||||    
T  18723174 aattgtttgttacgagtggtaatgataactctgcttccagagccgaaccaatcaggtcctccagccaaagcatgcagttgtttcaaattgtcaacatcat 18723273  T
Q  311 ctagaatcaacagaaccttcttt 333  Q
    | |||||||| |||| |||||||    
T  18723274 cgagaatcaaaagaatcttcttt 18723296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 18074590 - 18074529
Alignment:
Q  358 aagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||    
T  18074590 aagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttg 18074529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 186 - 322
Target Start/End: Complemental strand, 26137002 - 26136866
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgc 285  Q
    ||||| ||||||||||| || |||||| ||||||||||| ||||||||||| ||| || | |||||||||| ||||  | | |||||| |||||||||||    
T  26137002 tcttttaatcccatgacatgatagcaaatgtttgtctcgggtggtaatgatgactctactcccaggaccaagccaactaggctctccaaccaaaacctgc 26136903  T
Q  286 aattgctttagttcgtgaacatcatctagaatcaaca 322  Q
    || |||||||| | || ||| ||||| ||||||||||    
T  26136902 aactgctttagcttgtcaacgtcatcgagaatcaaca 26136866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 334
Target Start/End: Original strand, 267409 - 267556
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgca 286  Q
    ||||| ||||||||||  | ||| ||||| |||||||||||||||| ||  ||| |  |||||   || |||||||||||| ||||||||||| | ||||    
T  267409 ctttctatcccatgacaggttagtaattgcttgtctcgagtggtaacgacgactctgcttccatagccgaaccaatcaagtcctccagccaaagcatgca 267508  T
Q  287 attgctttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    |||| ||||  |||| ||||||||| |||||||| |||| ||||||||    
T  267509 attgttttatatcgttaacatcatcgagaatcaaaagaatcttctttc 267556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 187 - 334
Target Start/End: Original strand, 28126744 - 28126891
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgca 286  Q
    ||||| ||||||||||  | ||| || ||||| ||||||||||||||||| |||||  ||||| |||| |||||||||||| ||||||||||| |||  |    
T  28126744 ctttctatcccatgacaggttagtaagtgtttctctcgagtggtaatgatgactttgcttccacgaccgaaccaatcaagtcctccagccaaagcctcta 28126843  T
Q  287 attgctttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
      ||||  |||| ||  |||||||| |||||||| |||| ||||||||    
T  28126844 gctgctccagtttgtcgacatcatcaagaatcaaaagaatcttctttc 28126891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 28127029 - 28127089
Alignment:
Q  359 agaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    |||||||| ||||| |||||||||||||| ||| ||||||||| |||| ||||||||||||    
T  28127029 agaaaacataaaccttcaaattgatcagcaatgaaattataaattgcttttgcaagtgttg 28127089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 28163729 - 28163789
Alignment:
Q  359 agaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    |||||||| ||||| |||||||||||||| ||| ||||||||| |||| ||||||||||||    
T  28163729 agaaaacataaaccttcaaattgatcagcaatgaaattataaattgcttttgcaagtgttg 28163789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 28163445 - 28163583
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgca 286  Q
    ||||| ||||||||||  | ||| || ||||||||||||||||||||||| ||  |  ||||| |||| |||||||| ||| ||||||||||| ||| ||    
T  28163445 ctttctatcccatgacaggttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacgaccgaaccaatcgagtcctccagccaaagcctcca 28163544  T
Q  287 attgctttagttcgtgaacatcatctagaatcaacagaa 325  Q
      ||||  |||| ||  |||||||| |||||||| ||||    
T  28163545 gctgctccagtttgtcgacatcatcaagaatcaaaagaa 28163583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 267672 - 267754
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||| || || || ||||||||||| || || |||||||||||||| ||  ||||||| | |||||||||||| ||||    
T  267672 tgaattttctctcacatcatgaagaaaacataatccttcaaattgatcagcaataaaattatagattgctcttgcaagggttg 267754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 187 - 333
Target Start/End: Original strand, 3781 - 3927
Alignment:
Q  187 ctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgca 286  Q
    ||||| ||||||||||||  |||||| ||||||||||||||||||||||| ||  |  ||||| | |||||||||||| ||||||| |||||| |||| |    
T  3781 ctttctatcccatgacttcttagcaagtgtttgtctcgagtggtaatgatgaccctgcttccaaggccaaaccaatcaggttctcctgccaaagcctgta 3880  T
Q  287 attgctttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
     |||||  |  |||| ||||||||| |||||||| |||| |||||||    
T  3881 gttgctccatatcgtcaacatcatcgagaatcaaaagaatcttcttt 3927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 333
Target Start/End: Original strand, 12750 - 12890
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgct 292  Q
    ||||||||||||  ||| || ||||||||||||||||||||||| ||  |  ||||| | || ||||||||| || |||| |||||| | || | |||||    
T  12750 atcccatgacttcttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgct 12849  T
Q  293 ttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
    | |  |||| ||||||||| |||||||| |||  |||||||    
T  12850 tcatatcgtcaacatcatcgagaatcaaaagagtcttcttt 12890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 333
Target Start/End: Original strand, 17992289 - 17992430
Alignment:
Q  192 aatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgc 291  Q
    ||||||||||| || || ||| ||||||||||||||||||||||| ||| |  | ||| |||||| |||| || | |||||| |||||||||||||||||    
T  17992289 aatcccatgacatgttaacaaatgtttgtctcgagtggtaatgatgactctgctgccacgaccaagccaaccaggctctccaaccaaaacctgcaattgc 17992388  T
Q  292 tttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
    ||||||| ||  |  ||||| |||||||| ||||| ||||||    
T  17992389 tttagtttgtcgatgtcatcgagaatcaagagaactttcttt 17992430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 337 - 458
Target Start/End: Complemental strand, 3280509 - 3280388
Alignment:
Q  337 tgaattttcccttacgtcgtgaagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccacca 436  Q
    ||||||||| || || | |||||||||||| | ||  |||||||||| ||| ||| |||||||||||||||||||||| |||||||| |||||||| |||    
T  3280509 tgaattttctctcacattgtgaagaaaacatacacattcaaattgattagcaatgaaattataaactgctcttgcaagagttgtcttacccattcctcca 3280410  T
Q  437 gtcccatagatccctagcatct 458  Q
       |||||||| |||| |||||    
T  3280409 agtccatagatacctatcatct 3280388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 3280770 - 3280621
Alignment:
Q  189 ttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaat 288  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||||||||  || | |||  || ||||||||||||  ||||||| || || ||||      
T  3280770 ttcaatcccatgacttgataacaagtgtttgtctcgagtggtaatgatcaccctactaccaacactaaaccaatcaagccctccagctaagacttgcacc 3280671  T
Q  289 tgctttagttcgtgaacatcatctagaatcaacagaaccttctttcggtg 338  Q
    ||||| | ||||| ||| ||||| |||| ||| |||||||| || |||||    
T  3280670 tgcttcaattcgttaacgtcatcaagaaccaatagaacctttttccggtg 3280621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 334
Target Start/End: Original strand, 2614 - 2755
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgct 292  Q
    ||||||||||  | ||| || ||||||||||||||||||||||| |||||  ||||| | || ||||||||| || ||||||||||| | || | |||||    
T  2614 atcccatgacaggttagtaagtgtttgtctcgagtggtaatgatgactttgcttccacggccgaaccaatcaggtcctccagccaaagcatgtagttgct 2713  T
Q  293 ttagttcgtgaacatcatctagaatcaacagaaccttctttc 334  Q
    | |  | || ||||||||| |||||||| |||||||||||||    
T  2714 tcatattgtcaacatcatcaagaatcaaaagaaccttctttc 2755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 16441170 - 16441092
Alignment:
Q  186 tctttcaatcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatca 264  Q
    |||||||| |||||||||||||||||| |||||||| ||||| |||||||| ||| |  | ||||||||| ||||||||    
T  16441170 tctttcaaccccatgacttgctagcaactgtttgtcccgagttgtaatgataactctgctaccaggaccataccaatca 16441092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 29272913 - 29272999
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaa 279  Q
    ||||||||||  | |||||| |||||||||||||| |||||||| |||||  ||||| | || ||||||||| || |||||||||||    
T  29272913 atcccatgacaagttagcaagtgtttgtctcgagtagtaatgatgactttgcttccacggccgaaccaatcatgtcctccagccaaa 29272999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 8594 - 8454
Alignment:
Q  193 atcccatgacttgctagcaattgtttgtctcgagtggtaatgatcactttatttccaggaccaaaccaatcaagttctccagccaaaacctgcaattgct 292  Q
    ||||||||||||  ||| || ||||||||||||||||||||||| ||  |  ||||| | || ||||||||| || |||| |||||| | || | |||||    
T  8594 atcccatgacttcttagtaagtgtttgtctcgagtggtaatgatgaccctgcttccacggccgaaccaatcaggtcctcctgccaaagcatgtagttgct 8495  T
Q  293 ttagttcgtgaacatcatctagaatcaacagaaccttcttt 333  Q
    | |  |||| ||||||||| |||||||| |||  |||||||    
T  8494 tcatatcgtcaacatcatcgagaatcaaaagagtcttcttt 8454  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 419
Target Start/End: Complemental strand, 60398 - 60337
Alignment:
Q  358 aagaaaacacaaaccatcaaattgatcagctatggaattataaactgctcttgcaagtgttg 419  Q
    ||||||||| ||||| |||||||||||||| |   ||||||| | |||||||||||||||||    
T  60398 aagaaaacataaaccttcaaattgatcagcaacaaaattatagattgctcttgcaagtgttg 60337  T

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