View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_81 (Length: 290)
Name: NF1249_low_81
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_81 |
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Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 259312 - 259417
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaagaattgttgagc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
259312 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagtt--aaaaaaaaagtttatttctgacatataaagaattgttgagc |
259409 |
T |
|
| Q |
199 |
cctattca |
206 |
Q |
| |
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|||||||| |
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| T |
259410 |
cctattca |
259417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 656609 - 656504
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaagaattgttgagc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
656609 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagtt--aaaaaaaaagtttatttctgacatataaagaattgttgagc |
656512 |
T |
|
| Q |
199 |
cctattca |
206 |
Q |
| |
|
|||||||| |
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|
| T |
656511 |
cctattca |
656504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 842344 - 842239
Alignment:
| Q |
99 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaagaattgttgagc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
842344 |
taatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagtt--aaaaaaaaagtttatttctgacatataaagaattgttgagc |
842247 |
T |
|
| Q |
199 |
cctattca |
206 |
Q |
| |
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|||||||| |
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|
| T |
842246 |
cctattca |
842239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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