View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_84 (Length: 287)
Name: NF1249_low_84
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_84 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 37304804 - 37304693
Alignment:
| Q |
81 |
aagcaaaggaaggaactaagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaa |
180 |
Q |
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| T |
37304804 |
aagcaaaggaaggaactaagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtatttcatttaa |
37304705 |
T |
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| Q |
181 |
ttaatttggagg |
192 |
Q |
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|||||||||||| |
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| T |
37304704 |
ttaatttggagg |
37304693 |
T |
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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 37304670 - 37304636
Alignment:
| Q |
215 |
ggttgaaaaatgaagagtacttagaatgatttata |
249 |
Q |
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| T |
37304670 |
ggttgaaaaatgaagagtacttagaatgatttata |
37304636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 16825182 - 16825272
Alignment:
| Q |
81 |
aagcaaaggaaggaactaagcagagagttagggttagagccattgcaagtgaagttttggtttcagaacaaacgtactcaaatgaaggtat |
171 |
Q |
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|||||||||||||| ||||||||||||||||| | ||||| |||||||| |||||||||||||| |||||| | |||||||||||||||| |
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| T |
16825182 |
aagcaaaggaaggagttaagcagagagttagggcttgagcctttgcaagtcaagttttggtttcaaaacaaaaggactcaaatgaaggtat |
16825272 |
T |
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