View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_85 (Length: 286)
Name: NF1249_low_85
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_85 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 14812310 - 14812451
Alignment:
| Q |
65 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14812310 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
14812409 |
T |
|
| Q |
165 |
ccataaccattatctctaatagtgcgaatttgtatccacata |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
14812410 |
ccataaccattatctctaatagtgcaaatttgtaaccacata |
14812451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 65 - 206
Target Start/End: Original strand, 15259305 - 15259446
Alignment:
| Q |
65 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
164 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15259305 |
gaacctgtggtcagaacctgaaaatttagttttggatcatctccttgcttagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
15259404 |
T |
|
| Q |
165 |
ccataaccattatctctaatagtgcgaatttgtatccacata |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
15259405 |
ccataaccattatctctaatagtgcaaatttgtaaccacata |
15259446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 14804890 - 14805009
Alignment:
| Q |
65 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
164 |
Q |
| |
|
||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
14804890 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
14804989 |
T |
|
| Q |
165 |
ccataaccattatctctaat |
184 |
Q |
| |
|
| ||||||| |||||||| |
|
|
| T |
14804990 |
cagcaaccattgtctctaat |
14805009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 15251884 - 15252003
Alignment:
| Q |
65 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
164 |
Q |
| |
|
||||||||||||| ||| |||| | ||||||| |||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
15251884 |
gaacctgtggtcaaaacgtgaacacttagtttaggatcatcacttagctcagcgtggcttctataaaacccttgtaacgtttcttttgaggttttcgtat |
15251983 |
T |
|
| Q |
165 |
ccataaccattatctctaat |
184 |
Q |
| |
|
| ||||||| |||||||| |
|
|
| T |
15251984 |
cagcaaccattgtctctaat |
15252003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 65 - 206
Target Start/End: Complemental strand, 17521870 - 17521729
Alignment:
| Q |
65 |
gaacctgtggtcagaacctgaaaaattagttttggatcatcgcctagctcagcgtggcttctataaaagccttgtaacatttcttttgaggttttcatat |
164 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17521870 |
gaacctgtggtcagaacctgaaaacttagttttggatcatcacctcgctcagcgtggcttctataaaagccttgtaacatttcttttgaggtttttatat |
17521771 |
T |
|
| Q |
165 |
ccataaccattatctctaatagtgcgaatttgtatccacata |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
17521770 |
ccataaccattatctctaatagtgcaaatttgtaaccacata |
17521729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 913229 - 913263
Alignment:
| Q |
7 |
gttgttatatactatcatcaatgcctttcttcttg |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
913229 |
gttgttatatactatcatcaatgcctttcttcttg |
913263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University