View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1249_low_88 (Length: 276)
Name: NF1249_low_88
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_88 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 4558727 - 4558499
Alignment:
| Q |
38 |
cttagctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558727 |
cttagctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgt |
4558628 |
T |
|
| Q |
138 |
tgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558627 |
tgaaactagcaaaacttcttcaccttagaggatttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgc |
4558528 |
T |
|
| Q |
238 |
ctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
4558527 |
ctttgatggtttcactgattttagctttg |
4558499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 4572568 - 4572340
Alignment:
| Q |
38 |
cttagctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4572568 |
cttagctcaacattcaaacacaaaaactcaataatgagtgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgt |
4572469 |
T |
|
| Q |
138 |
tgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgc |
237 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
4572468 |
tgcaactagcaaaatttcttcaccttagaggttttcacataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgc |
4572369 |
T |
|
| Q |
238 |
ctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||||||||||||| |||||| ||||| |
|
|
| T |
4572368 |
ctttgatggtttcaccaattttaactttg |
4572340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 42 - 266
Target Start/End: Complemental strand, 4587228 - 4587006
Alignment:
| Q |
42 |
gctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaa |
141 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4587228 |
gctcaaaattcaaacacaaa--ctcagaaatgagtgattcaaaacctcatgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaa |
4587131 |
T |
|
| Q |
142 |
actagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgccttt |
241 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
4587130 |
actagctaaacttcttcaccttcgaggatttcacataacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgccttt |
4587031 |
T |
|
| Q |
242 |
gatggtttcactgattttacctttg |
266 |
Q |
| |
|
|||| ||| |||||||||| ||||| |
|
|
| T |
4587030 |
gatgatttaactgattttagctttg |
4587006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 45 - 266
Target Start/End: Original strand, 4612253 - 4612472
Alignment:
| Q |
45 |
caacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaact |
144 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
4612253 |
caacattcaaacacaaa--ctcagaaatgagtgattcaaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaact |
4612350 |
T |
|
| Q |
145 |
agcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgat |
244 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| | || ||||| |||||||| |||||||| |||||||| |||||||||||||||||||||| | |
|
|
| T |
4612351 |
agcaaaacttcttcaccttagaggctttcacataacattcgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgtt |
4612450 |
T |
|
| Q |
245 |
ggtttcactgattttacctttg |
266 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4612451 |
ggtttcactgattttacctttg |
4612472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 3173561 - 3173377
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
3173561 |
aaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagaggctttcacataacc |
3173462 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
3173461 |
tttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttg |
3173377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 86 - 266
Target Start/End: Original strand, 4488771 - 4488951
Alignment:
| Q |
86 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
185 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||| || |
|
|
| T |
4488771 |
ccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttg |
4488870 |
T |
|
| Q |
186 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
4488871 |
tcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttg |
4488951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 86 - 266
Target Start/End: Complemental strand, 4517894 - 4517714
Alignment:
| Q |
86 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
185 |
Q |
| |
|
|||||||| ||| ||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||| || |
|
|
| T |
4517894 |
ccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttg |
4517795 |
T |
|
| Q |
186 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| ||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4517794 |
tcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttg |
4517714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 4576015 - 4575829
Alignment:
| Q |
80 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
179 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
4576015 |
aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa |
4575916 |
T |
|
| Q |
180 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||| ||| |||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4575915 |
cctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttg |
4575829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 78 - 266
Target Start/End: Original strand, 4258742 - 4258930
Alignment:
| Q |
78 |
ataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat |
177 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| || ||||||||| ||| |||||||||||| |
|
|
| T |
4258742 |
ataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacat |
4258841 |
T |
|
| Q |
178 |
aacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||| ||| ||||||||||| || |||||||| |||||||| ||||||||| ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4258842 |
aacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttg |
4258930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 4507469 - 4507285
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| || |||||||||||| |||| |||||||||||| |
|
|
| T |
4507469 |
aaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggctttcacataacc |
4507370 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4507369 |
tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttg |
4507285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 4618859 - 4618675
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
4618859 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
4618760 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||| || |||| ||||| |
|
|
| T |
4618759 |
tttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttg |
4618675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 86 - 266
Target Start/End: Complemental strand, 4627704 - 4627524
Alignment:
| Q |
86 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
185 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||||||||| || |
|
|
| T |
4627704 |
ccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttg |
4627605 |
T |
|
| Q |
186 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4627604 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttg |
4627524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 4603668 - 4603484
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4603668 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
4603569 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| ||||||||||| |||||||| || || ||||||||||||| ||||| |
|
|
| T |
4603568 |
tttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttg |
4603484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 80 - 266
Target Start/End: Complemental strand, 4482425 - 4482239
Alignment:
| Q |
80 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
179 |
Q |
| |
|
|||||||||||||| ||||| | ||||| ||||| |||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
4482425 |
aaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagaggctttcacataa |
4482326 |
T |
|
| Q |
180 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||| ||| ||||| |||||||| |||||||| ||||| || ||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4482325 |
cctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttg |
4482239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 4513549 - 4513726
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| | | |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4513549 |
aaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacc |
4513648 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgatttt |
259 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
4513649 |
tttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgatttt |
4513726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 4594568 - 4594384
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4594568 |
aaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacc |
4594469 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| ||| |||||||||||||| || ||||| |||||||| |||||||||||||||||||| ||||||||| ||| ||||| ||||| |
|
|
| T |
4594468 |
tttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttg |
4594384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 76 - 266
Target Start/End: Complemental strand, 4581578 - 4581388
Alignment:
| Q |
76 |
tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcac |
175 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||| ||||||| ||||||| |||||| | | ||||||||| ||||||||||||||||| |||||| |
|
|
| T |
4581578 |
tgataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcac |
4581479 |
T |
|
| Q |
176 |
ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||||| ||| ||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
4581478 |
ataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttg |
4581388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 4623869 - 4623681
Alignment:
| Q |
78 |
ataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat |
177 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||| ||| |||||||| |
|
|
| T |
4623869 |
ataaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacat |
4623770 |
T |
|
| Q |
178 |
aacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||| || |||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| || |||| ||||| |
|
|
| T |
4623769 |
aacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttg |
4623681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 266
Target Start/End: Complemental strand, 4569607 - 4569448
Alignment:
| Q |
103 |
tccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaac |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| || || |
|
|
| T |
4569607 |
tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aat |
4569512 |
T |
|
| Q |
203 |
cacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4569511 |
cacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttg |
4569448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 4265631 - 4265805
Alignment:
| Q |
86 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
185 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||||| ||||||| || |||| ||| ||||||||||||||||| ||||||||||||| || |
|
|
| T |
4265631 |
ccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttg |
4265730 |
T |
|
| Q |
186 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgatttta |
260 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||| ||||||||||||||| | |||||||||||| ||| |||| |
|
|
| T |
4265731 |
tcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgacttta |
4265805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 82 - 248
Target Start/End: Complemental strand, 4565587 - 4565421
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4565587 |
aaaaccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacc |
4565488 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtt |
248 |
Q |
| |
|
| ||| |||||||||||||| || ||||| ||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
4565487 |
tttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggtt |
4565421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 86 - 266
Target Start/End: Complemental strand, 4462761 - 4462581
Alignment:
| Q |
86 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
185 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
4462761 |
ccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacctttg |
4462662 |
T |
|
| Q |
186 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| |||||||||||||| ||||| | |||||||| ||||||||||| ||| | | |||||||||||||| |||| ||||| |
|
|
| T |
4462661 |
tcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttg |
4462581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 86 - 266
Target Start/End: Complemental strand, 4471468 - 4471288
Alignment:
| Q |
86 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
185 |
Q |
| |
|
||||||||||| || ||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| | || |
|
|
| T |
4471468 |
ccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggctttcacataacgtttg |
4471369 |
T |
|
| Q |
186 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| |||||||||||||| |||||| |||||||| ||||||||||| || | |||||||||||||||| |||| ||||| |
|
|
| T |
4471368 |
tcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttg |
4471288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 98 - 266
Target Start/End: Complemental strand, 4562204 - 4562036
Alignment:
| Q |
98 |
ttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacat-aacctatgtaaacactgaa |
196 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||| ||||||||||| |||||||||| |||||||| ||||| |||||||| ||||| ||| ||||||||| |
|
|
| T |
4562204 |
ttaactccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaa |
4562105 |
T |
|
| Q |
197 |
tacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||| |||||||| ||||| || ||||||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4562104 |
tacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttg |
4562036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 264
Target Start/End: Complemental strand, 4599758 - 4599539
Alignment:
| Q |
43 |
ctcaacattcaaacacaaaaactcaaaaatgagtgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaa |
142 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| |||||||| |||||| || || ||||||| ||| ||||||| ||||||||| ||| | ||| |
|
|
| T |
4599758 |
ctcaacattcaaacacaaa--ctcacaaatgagtggtaaaaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaa |
4599661 |
T |
|
| Q |
143 |
ctagcaaaacttcttcaccttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttg |
242 |
Q |
| |
|
|||||||| |||||||||||||||| ||| ||||||||| || ||||| || ||||| |||||||| |||||||| ||||||||||| ||| | | |
|
|
| T |
4599660 |
ctagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgta |
4599561 |
T |
|
| Q |
243 |
atggtttcactgattttacctt |
264 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
4599560 |
atggtttcactgatttttcctt |
4599539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 4502943 - 4503047
Alignment:
| Q |
162 |
ttagaggttttcacataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttac |
261 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
262 |
ctttg |
266 |
Q |
| |
|
||||| |
|
|
| T |
4503043 |
ctttg |
4503047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 253
Target Start/End: Original strand, 4255395 - 4255550
Alignment:
| Q |
86 |
ccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatg |
185 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||| | ||||| |||| ||| || || |
|
|
| T |
4255395 |
ccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaagg------------ctttg |
4255482 |
T |
|
| Q |
186 |
taaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcact |
253 |
Q |
| |
|
| ||||| |||||||| |||||||| |||||| | |||||||||||||| ||||||||||||| |||| |
|
|
| T |
4255483 |
tcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggttccact |
4255550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 4497813 - 4497899
Alignment:
| Q |
80 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttaga |
166 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
4497813 |
aaaaagccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga |
4497899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 4493463 - 4493401
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaact |
144 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||| |||||| ||||||||| || || ||||||| |
|
|
| T |
4493463 |
aaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaatgcaatgctgaaact |
4493401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 1282991 - 1282807
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||| |
|
|
| T |
1282991 |
aaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacc |
1282892 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
| ||| || ||||||||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||||||| ||||| |
|
|
| T |
1282891 |
tttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttg |
1282807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 35776320 - 35776276
Alignment:
| Q |
166 |
aggttttcacataacctatgtaaacactgaatacaaccacaaacg |
210 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35776320 |
aggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35776276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 35842126 - 35842083
Alignment:
| Q |
167 |
ggttttcacataacctatgtaaacactgaatacaaccacaaacg |
210 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35842126 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35842083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 35854634 - 35854591
Alignment:
| Q |
167 |
ggttttcacataacctatgtaaacactgaatacaaccacaaacg |
210 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35854634 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35854591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 35869243 - 35869200
Alignment:
| Q |
167 |
ggttttcacataacctatgtaaacactgaatacaaccacaaacg |
210 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||||| |
|
|
| T |
35869243 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacg |
35869200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 1316 - 1132
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||| ||||| |
|
|
| T |
1316 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1217 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
1216 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttg |
1132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 1676079 - 1675895
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||| ||||| |
|
|
| T |
1676079 |
aaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacc |
1675980 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
||||| |||||||||||||| |||||||| |||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
1675979 |
tatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttg |
1675895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 80 - 255
Target Start/End: Original strand, 20862378 - 20862553
Alignment:
| Q |
80 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
179 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||| |||||||||||| |||| |||||||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
20862378 |
aaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataa |
20862477 |
T |
|
| Q |
180 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactga |
255 |
Q |
| |
|
| | ||| || ||||||||||| |||||||| ||||| ||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
20862478 |
catttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactga |
20862553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 80 - 259
Target Start/End: Complemental strand, 2384 - 2205
Alignment:
| Q |
80 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataa |
179 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
2384 |
aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa |
2285 |
T |
|
| Q |
180 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgatttt |
259 |
Q |
| |
|
||| ||| |||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
2284 |
cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttt |
2205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 2021 - 2198
Alignment:
| Q |
82 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacc |
181 |
Q |
| |
|
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
2021 |
aaaaccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacc |
2120 |
T |
|
| Q |
182 |
tatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgatttt |
259 |
Q |
| |
|
| ||| |||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
2121 |
tttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttt |
2198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 259
Target Start/End: Complemental strand, 3088309 - 3088126
Alignment:
| Q |
76 |
tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcac |
175 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
3088309 |
tgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcac |
3088210 |
T |
|
| Q |
176 |
ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgatttt |
259 |
Q |
| |
|
||||||| ||| || || |||||||| ||||| || ||||| || ||||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
3088209 |
ataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgatttt |
3088126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 266
Target Start/End: Complemental strand, 24104646 - 24104469
Alignment:
| Q |
89 |
catgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggttttcacataacctatgtaa |
188 |
Q |
| |
|
||||||||||| |||||| |||| ||||||| ||||||||| ||||||| ||||||| ||| ||||||||||||||||| ||||||||||||| || | |
|
|
| T |
24104646 |
catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtga |
24104547 |
T |
|
| Q |
189 |
acactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttacctttg |
266 |
Q |
| |
|
|||| |||||||| |||||||| |||||| | ||||||| ||| ||| | |||||||||||| ||| |||| ||||| |
|
|
| T |
24104546 |
acaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttg |
24104469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University