View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1249_low_89 (Length: 268)
Name: NF1249_low_89
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1249_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 39954986 - 39955108
Alignment:
| Q |
1 |
tcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatga |
100 |
Q |
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| T |
39954986 |
tcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatga |
39955085 |
T |
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| Q |
101 |
agtaatgaagttgagggaagaat |
123 |
Q |
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| T |
39955086 |
agtaatgaagttgagggaagaat |
39955108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 39954712 - 39954752
Alignment:
| Q |
78 |
cagaaagataccatttgcaatgaagtaatgaagttgaggga |
118 |
Q |
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| T |
39954712 |
cagaaagataccatttgtaatgacgtaatgaagttgaggga |
39954752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 39954773 - 39954849
Alignment:
| Q |
46 |
aagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagttgagggaagaa |
122 |
Q |
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| T |
39954773 |
aagaaaatgaagcacagaagaatgaactcaagcagaaaggtaccatcaataatgaagtaatgaagctgagggaagaa |
39954849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 213 - 264
Target Start/End: Original strand, 35529637 - 35529688
Alignment:
| Q |
213 |
gagaaaaatttaaattcctgataacactagaacaccgtgtgttaatgcatat |
264 |
Q |
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| T |
35529637 |
gagaaaaatttaaattcctgataacactagaacaccgtgtgttaatgcatat |
35529688 |
T |
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