View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1249_low_92 (Length: 252)

Name: NF1249_low_92
Description: NF1249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1249_low_92
NF1249_low_92
[»] chr4 (14 HSPs)
chr4 (1-241)||(837777-838014)
chr4 (155-241)||(829417-829503)
chr4 (9-77)||(829589-829658)
chr4 (4-84)||(8443439-8443520)
chr4 (1-77)||(10482182-10482259)
chr4 (1-64)||(10468043-10468107)
chr4 (8-65)||(6392832-6392890)
chr4 (162-203)||(10460823-10460864)
chr4 (156-205)||(10468228-10468277)
chr4 (37-84)||(8447639-8447686)
chr4 (1-71)||(53774841-53774912)
chr4 (1-65)||(6372446-6372511)
chr4 (156-205)||(10482367-10482416)
chr4 (159-227)||(10475405-10475473)
[»] chr1 (1 HSPs)
chr1 (1-79)||(50645475-50645554)
[»] chr2 (1 HSPs)
chr2 (1-70)||(25377075-25377145)
[»] chr3 (2 HSPs)
chr3 (1-77)||(25915289-25915366)
chr3 (1-71)||(25901277-25901348)
[»] chr7 (3 HSPs)
chr7 (9-71)||(20133315-20133378)
chr7 (1-71)||(22063643-22063714)
chr7 (35-75)||(26256811-26256851)
[»] chr6 (1 HSPs)
chr6 (1-75)||(20770651-20770726)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 837777 - 838014
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatcataatttatattcagaaacaaacaaggtt 99  Q
    |||||||||||||||||||||  |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||     
T  837777 ttttgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattagctatcataatttatattcagaaacaa----ggtg 837872  T
Q  100 taaaggttttaatttgttgccattgtatatatctttctgagaatggtgatacatcgacgaggcatttatctataactgcagagacaatagagtagaggaa 199  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  837873 taaaggttttaatttgttgccactgtatatatctttctgagaatggtgatacatcgacgagatatttatctataactgcagagacaatagagtagaggaa 837972  T
Q  200 attggatctaatgataataaattctggtcgaaggctaaggat 241  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  837973 attggatctaatgataataaattatggtcgaaggctaaggat 838014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 829503 - 829417
Alignment:
Q  155 gacgaggcatttatctataactgcagagacaatagagtagaggaaattggatctaatgataataaattctggtcgaaggctaaggat 241  Q
    ||||| |||||||| |||||||||||| |||||||||||||| ||||||||  ||||||||||| |||||||||| | |||||||||    
T  829503 gacgaagcatttatttataactgcagatacaatagagtagagaaaattggaattaatgataatatattctggtcggaagctaaggat 829417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 829658 - 829589
Alignment:
Q  9 tatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatcataattt 77  Q
    |||| |||||||| ||||||| |||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  829658 tatgccaaatgaaggattttggtgttcaagagtcttgggttcaattatttaaaattagttatcataattt 829589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 8443520 - 8443439
Alignment:
Q  4 tgttatatggcaaatgaaagattttgatgttaa-gagtcttggattcaattatttaaaattagctatcataatttatattca 84  Q
    |||||| ||||| ||||| |||||||  ||| | ||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  8443520 tgttatttggcagatgaaggattttggagttcacgagtcttggattcaattatttaaaattagttatcagaatttattttca 8443439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 10482182 - 10482259
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgttaaga-gtcttggattcaattatttaaaattagctatcataattt 77  Q
    ||||||||||||||||||||| |||||||  ||| ||  ||||||||||||||||||||||||||  ||||| |||||    
T  10482182 ttttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattatttaaaattacttatcagaattt 10482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10468043 - 10468107
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgttaaga-gtcttggattcaattatttaaaatta 64  Q
    ||||||||||||||||||||| |||||||  ||| ||  ||||||||||||||||||||||||||    
T  10468043 ttttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattatttaaaatta 10468107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 6392832 - 6392890
Alignment:
Q  8 atatggcaaatgaaagattttgatgttaa-gagtcttggattcaattatttaaaattag 65  Q
    |||||||||||||| |||||||  ||| | |||||||||||||||||||||||||||||    
T  6392832 atatggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattag 6392890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 203
Target Start/End: Original strand, 10460823 - 10460864
Alignment:
Q  162 catttatctataactgcagagacaatagagtagaggaaattg 203  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  10460823 catttatctataattgcagagacaatagagtagagaaaattg 10460864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 10468228 - 10468277
Alignment:
Q  156 acgaggcatttatctataactgcagagacaatagagtagaggaaattgga 205  Q
    |||||| |||||||||||| ||||||||| ||||||||||| ||||||||    
T  10468228 acgagggatttatctataattgcagagacgatagagtagagaaaattgga 10468277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 8447686 - 8447639
Alignment:
Q  37 gagtcttggattcaattatttaaaattagctatcataatttatattca 84  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||||    
T  8447686 gagtcttggattcaattatttaaaattaattatcagaatttattttca 8447639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 53774841 - 53774912
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatca 71  Q
    ||||||||||||||||||||| || ||||  ||| |||||||||||| ||||||  |||||||||| |||||    
T  53774841 ttttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttatca 53774912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6372446 - 6372511
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattag 65  Q
    |||| |||||||||||||||| |||| ||  ||| ||||||||| ||||||||||| |||||||||    
T  6372446 ttttattatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattag 6372511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 10482367 - 10482416
Alignment:
Q  156 acgaggcatttatctataactgcagagacaatagagtagaggaaattgga 205  Q
    |||| ||||||||||||||  |||||||| ||||||||||| ||||||||    
T  10482367 acgaagcatttatctataatcgcagagacgatagagtagagaaaattgga 10482416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 10475405 - 10475473
Alignment:
Q  159 aggcatttatctataactgcagagacaatagagtagaggaaattggatctaatgataataaattctggt 227  Q
    ||||||||||||||||| ||| ||||||||||||| ||  |||||||  || | |||||| ||||||||    
T  10475405 aggcatttatctataaccgcaaagacaatagagtaaagcgaattggaattactaataatatattctggt 10475473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 50645554 - 50645475
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatcataatttat 79  Q
    ||||||||| ||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||| ||| | |||||||    
T  50645554 ttttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttataacaatttat 50645475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25377075 - 25377145
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatc 70  Q
    |||||||||||||   ||||| |||||||  ||| ||||||||||||||||||||||||||||||| ||||    
T  25377075 ttttgttatatggatgatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttatc 25377145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 25915366 - 25915289
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatcataattt 77  Q
    ||||||||||||| ||||||| ||||||   ||| ||||||||||||||||||| || |||||||| ||||| |||||    
T  25915366 ttttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaattt 25915289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 25901348 - 25901277
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatca 71  Q
    ||||||||||||| ||||||| ||||||   ||| ||||||||||||||||||| || |||||||| |||||    
T  25901348 ttttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatca 25901277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 20133378 - 20133315
Alignment:
Q  9 tatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatca 71  Q
    |||||||||||||||| ||||  ||| |||| ||||||||||| |||||||| |||||||||||    
T  20133378 tatggcaaatgaaagaatttggagttgaagattcttggattcagttatttaacattagctatca 20133315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22063643 - 22063714
Alignment:
Q  1 ttttgttatatggcaaatgaaag-attttgatgttaagagtcttggattcaattatttaaaattagctatca 71  Q
    ||||||||||||||||||||| | |||| ||| | |||||||||||| ||| ||||| |||||||| |||||    
T  22063643 ttttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagttatca 22063714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 26256811 - 26256851
Alignment:
Q  35 aagagtcttggattcaattatttaaaattagctatcataat 75  Q
    |||||||||||| |||||||||||| |||||||| ||||||    
T  26256811 aagagtcttggactcaattatttaagattagctaccataat 26256851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20770651 - 20770726
Alignment:
Q  1 ttttgttatatggcaaatgaaagattttgatgtt-aagagtcttggattcaattatttaaaattagctatcataat 75  Q
    ||||||||||||||||||||| || ||||   || ||||||| |||||||||||  |||||||||| |||||||||    
T  20770651 ttttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataat 20770726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University